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NC_053210.1__YP_010001392.1__J1597_gp12__00012
Bact-VirNC_053210.1__YP_010001392.1__J1597_gp12__00012
Identity
- Accession:
- NC_053210 ↗
- Kingdom:
- phage
Quality
77.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stackebrandtviridae›
Dexdertvirus›
Gordonia_phage_Dexdert
TaxID: 2794946
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 81-167
Domain cluster:
rep: NC_071085.1__YP_010683515.1__PQF11_gp31__00031__D48-140
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07553.17 best | Lipoprotein_Ltp | 48.6 | 9.60e-13 | 49.4% | 89.6% |
| PF07553.17 | Lipoprotein_Ltp | 47.6 | 2.10e-12 | 47.1% | 91.7% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1irzA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 35.0 | 3.96e-01 | 96.6% | 81.2% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.54 | 33.0 | 3.37e-01 | 81.6% | 60.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4112388 | 101.35.1.19 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2+RecX_HTH1 | 0.87 | 82.0 | 7.76e-01 | 100.0% | 90.0% |
| 3657736 | 101.35.1.19 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2+RecX_HTH1 | 0.83 | 76.0 | 7.16e-01 | 100.0% | 86.7% |
| 4037221 | 101.35.1.19 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2+RecX_HTH1 | 0.83 | 77.0 | 7.35e-01 | 100.0% | 90.0% |
| 4106845 | 101.35.1.26 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2, RecX_HTH3 | 0.75 | 67.0 | 6.45e-01 | 100.0% | 92.0% |
| 4438233 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.58 | 53.0 | 4.98e-01 | 98.9% | 88.6% |
| 3587343 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.57 | 47.0 | 3.12e-01 | 92.0% | 76.5% |
| 3936170 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.57 | 39.0 | 3.33e-01 | 72.4% | 84.1% |
| 3407805 | 109.26.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | 0.55 | 47.0 | 2.84e-01 | 100.0% | 21.5% |
| 3993576 | 610.3.1.3 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › tRNA_synt_1c_R1 | 0.54 | 40.0 | 3.29e-01 | 80.5% | 55.8% |
| 3700088 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.51 | 43.0 | 3.76e-01 | 90.8% | 86.2% |