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NC_053211.1__YP_010001517.1__J1598_gp55__00055
Bact-VirNC_053211.1__YP_010001517.1__J1598_gp55__00055
Identity
- Accession:
- NC_053211 ↗
- Kingdom:
- phage
Quality
51.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stackebrandtviridae›
Dexdertvirus›
Gordonia_phage_Tiamoceli
TaxID: 2510508
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-34_124-167
D2
high
residues 43-93
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.71 | 60.0 | 4.30e-01 | 100.0% | 46.7% |
| 2p5vA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.67 | 56.0 | 4.89e-01 | 100.0% | 86.9% |
| 1s5jA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.64 | 54.0 | 3.91e-01 | 100.0% | 75.2% |
| 2hvzA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 49.0 | 4.56e-01 | 98.0% | 100.0% |
| 2yz2B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 45.0 | 2.88e-01 | 80.4% | 66.5% |
| 2hh2A00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 51.0 | 4.47e-01 | 100.0% | 98.7% |
| 2v9kA03 | 3.30.70.2510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 48.0 | 3.80e-01 | 100.0% | 84.8% |
| 6uqjA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 45.0 | 2.82e-01 | 86.3% | 35.4% |
| 2wadA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.59 | 43.0 | 3.20e-01 | 100.0% | 28.4% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 45.0 | 3.73e-01 | 100.0% | 48.7% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.56 | 41.0 | 4.21e-01 | 100.0% | 90.0% |
| 1xc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 45.0 | 3.75e-01 | 100.0% | 46.6% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.55 | 42.0 | 4.08e-01 | 100.0% | 76.7% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.55 | 43.0 | 3.19e-01 | 100.0% | 33.1% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.54 | 41.0 | 3.14e-01 | 88.2% | 47.9% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.54 | 37.0 | 3.11e-01 | 70.6% | 63.6% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 44.0 | 3.99e-01 | 100.0% | 75.0% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 41.0 | 3.93e-01 | 100.0% | 76.1% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.52 | 42.0 | 3.35e-01 | 100.0% | 52.0% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 44.0 | 3.86e-01 | 100.0% | 77.2% |
| 1wpwA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.51 | 42.0 | 2.65e-01 | 100.0% | 46.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4952659 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.77 | 66.0 | 5.99e-01 | 98.0% | 100.0% |
| 3945340 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.66 | 52.0 | 3.87e-01 | 100.0% | 32.0% |
| 4461643 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.66 | 45.0 | 4.32e-01 | 100.0% | 61.7% |
| 4410550 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.64 | 44.0 | 4.42e-01 | 100.0% | 74.0% |
| 4949196 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.64 | 56.0 | 5.34e-01 | 100.0% | 91.7% |
| 3715676 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 45.0 | 3.89e-01 | 100.0% | 45.6% |
| 4985395 | 304.4.1.75 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GYD | 0.63 | 51.0 | 4.64e-01 | 100.0% | 100.0% |
| 4329174 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.62 | 47.0 | 3.36e-01 | 86.3% | 26.5% |
| 1002449 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.62 | 47.0 | 3.58e-01 | 84.3% | 36.9% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 49.0 | 4.89e-01 | 100.0% | 85.5% |
| 5040784 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.61 | 50.0 | 5.05e-01 | 100.0% | 96.0% |
| 3264069 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.58 | 45.0 | 4.32e-01 | 100.0% | 75.0% |
| 3929887 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.58 | 46.0 | 3.69e-01 | 100.0% | 42.7% |
| 4957781 | 807.1.1.0 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) | 0.57 | 46.0 | 4.71e-01 | 100.0% | 98.0% |
| 3508351 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.56 | 42.0 | 3.15e-01 | 100.0% | 29.3% |
| 3499101 | 3346.1.1.5 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like | 0.56 | 44.0 | 3.13e-01 | 100.0% | 27.0% |
| 4951473 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.55 | 45.0 | 4.28e-01 | 100.0% | 84.1% |
| 4160542 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.55 | 44.0 | 4.33e-01 | 100.0% | 91.4% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 45.0 | 4.20e-01 | 100.0% | 82.9% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.55 | 45.0 | 4.40e-01 | 100.0% | 98.3% |
| 3958992 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.54 | 45.0 | 3.99e-01 | 100.0% | 88.7% |
| 3957797 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.53 | 41.0 | 3.99e-01 | 100.0% | 100.0% |
| 5038375 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.51 | 42.0 | 2.91e-01 | 100.0% | 33.0% |
| 4364088 | 3115.4.1.0 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 | 0.50 | 39.0 | 4.04e-01 | 98.0% | 100.0% |