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NC_053236.1__YP_010001781.1__J1763_gp72__00072
Bact-VirNC_053236.1__YP_010001781.1__J1763_gp72__00072
Identity
- Accession:
- NC_053236 ↗
- Kingdom:
- phage
Quality
76.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stackebrandtviridae›
Kroosvirus›
Gordonia_phage_YorkOnyx
TaxID: 2762402
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-149
Domain cluster:
rep: MW314850.1__QPO17149.1__SEA_LILBEANIE_71__00071__D4-139
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6mw4A01 | 2.60.120.1290 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 37.0 | 3.92e-01 | 97.2% | 68.5% |
| 2vugA05 | 3.30.70.3360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 22.0 | 3.56e-01 | 83.4% | 97.9% |
| 7jvhC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 38.0 | 2.95e-01 | 93.1% | 30.9% |
| 4qzvB02 | 2.20.210.30 | Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › | 0.52 | 26.0 | 3.50e-01 | 87.6% | 98.5% |
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 38.0 | 3.87e-01 | 77.9% | 94.6% |
| 3d2uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 30.0 | 3.62e-01 | 82.8% | 91.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4888846 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.55 | 27.0 | 3.25e-01 | 82.8% | 67.7% |
| 5030321 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 36.0 | 4.02e-01 | 80.0% | 84.3% |
| 3828729 | 11.1.1.394 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF568 | 0.55 | 46.0 | 4.10e-01 | 89.7% | 66.8% |
| 3924873 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.52 | 44.0 | 3.99e-01 | 89.7% | 90.0% |
| 3380753 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 27.0 | 3.32e-01 | 93.8% | 80.0% |
| 1930620 | 1133.1.1.0 ↗ | beta sandwiches › Immunomodulator A46 N-terminal domain › Immunomodulator A46 N-terminal domain › Immunomodulator A46 N-terminal domain | 0.51 | 28.0 | 3.63e-01 | 88.3% | 98.7% |
| 3220160 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 38.0 | 3.90e-01 | 78.6% | 98.6% |
| 5040130 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.50 | 27.0 | 3.34e-01 | 91.7% | 83.3% |