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NC_053236.1__YP_010001789.1__J1763_gp80__00080

Bact-Vir

NC_053236.1__YP_010001789.1__J1763_gp80__00080

Identity

Accession:
NC_053236 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Kroosvirus› Gordonia_phage_YorkOnyx

TaxID: 2762402

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-68
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.66 49.0 4.83e-01 80.0% 100.0%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 55.0 4.50e-01 100.0% 49.6%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.64 55.0 3.92e-01 100.0% 55.6%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.61 47.0 3.92e-01 100.0% 46.3%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 46.0 3.76e-01 100.0% 40.7%
7oiyA01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 51.0 3.57e-01 100.0% 41.6%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 46.0 3.96e-01 86.2% 97.2%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 46.0 3.70e-01 86.2% 74.8%
2lktA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 51.0 4.10e-01 95.4% 60.0%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.32e-01 96.9% 79.6%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 46.0 3.89e-01 90.8% 87.4%
2b1xA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 46.0 3.80e-01 90.8% 86.5%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 50.0 4.93e-01 96.9% 98.5%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.74e-01 87.7% 80.7%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 50.0 4.17e-01 100.0% 58.8%
1bnkA00 3.10.300.10 Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) 0.57 48.0 3.52e-01 100.0% 77.0%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 46.0 3.93e-01 92.3% 97.2%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 48.0 4.60e-01 96.9% 83.8%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.56 41.0 3.70e-01 80.0% 97.8%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.64e-01 93.8% 95.4%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 46.0 2.99e-01 96.9% 85.3%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 41.0 3.49e-01 81.5% 93.9%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.50e-01 98.5% 91.9%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 4.42e-01 81.5% 96.4%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 40.0 3.72e-01 100.0% 61.2%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 38.0 3.28e-01 75.4% 98.2%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 3.95e-01 93.8% 68.9%
1kcfB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 44.0 3.04e-01 90.8% 88.2%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 35.0 3.48e-01 83.1% 64.2%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.60e-01 87.7% 71.2%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.53 43.0 4.10e-01 98.5% 91.6%
2k3yA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 3.80e-01 100.0% 84.3%
1r5bA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 44.0 3.70e-01 93.8% 77.3%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.35e-01 83.1% 70.3%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.40e-01 89.2% 76.6%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.52 39.0 3.51e-01 83.1% 92.6%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 3.74e-01 96.9% 64.8%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.81e-01 93.8% 78.0%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 38.0 3.46e-01 81.5% 90.1%
1ckmA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.50 41.0 3.18e-01 100.0% 38.7%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 39.0 3.51e-01 89.2% 88.8%
2ahoB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 34.0 3.23e-01 70.8% 91.3%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2394538 2.1.1.101 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › KfrB 0.66 41.0 3.32e-01 80.0% 35.7%
3958547 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 45.0 4.51e-01 70.8% 89.2%
3341084 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.65 51.0 4.47e-01 86.2% 98.0%
5061340 11.1.1.237 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.65 47.0 4.62e-01 93.8% 71.4%
4220126 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 56.0 5.17e-01 100.0% 83.5%
3389028 325.1.7.4 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › GCV_H 0.64 48.0 3.69e-01 81.5% 92.0%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.63 48.0 5.03e-01 100.0% 93.1%
4605081 219.1.1.19 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C54 0.63 54.0 3.55e-01 100.0% 29.7%
3914347 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.63 47.0 3.74e-01 81.5% 97.0%
1557491 10.32.1.1 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.63 54.0 3.97e-01 100.0% 53.5%
3199259 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.62 50.0 5.06e-01 93.8% 90.8%
3539509 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.61 53.0 3.52e-01 100.0% 26.8%
3893771 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.61 47.0 4.94e-01 83.1% 95.0%
3968312 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.61 47.0 4.08e-01 87.7% 89.8%
3356591 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.32e-01 100.0% 62.1%
5060624 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 44.0 4.21e-01 93.8% 68.0%
3972313 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.59 47.0 3.77e-01 90.8% 79.3%
5002574 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 49.0 4.44e-01 93.8% 66.7%
146935 3158.1.1.1 ↗ beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 0.58 50.0 4.98e-01 98.5% 98.6%
3974846 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.58 47.0 4.05e-01 100.0% 55.5%
4933391 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 42.0 3.96e-01 92.3% 63.7%
3708283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 47.0 4.36e-01 92.3% 94.1%
3998574 206.1.1.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fam20C 0.57 39.0 2.60e-01 72.3% 48.1%
5035508 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 50.0 3.61e-01 100.0% 61.0%
4338601 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 50.0 4.55e-01 100.0% 77.8%
4072878 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 50.0 4.71e-01 100.0% 92.5%
3624076 206.1.1.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fam20C 0.57 38.0 2.37e-01 70.8% 31.6%
5075955 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 49.0 4.43e-01 100.0% 95.5%
3451171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.62e-01 100.0% 98.5%
4178962 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 42.0 3.87e-01 83.1% 88.2%
3886139 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 46.0 4.67e-01 100.0% 95.4%
4981615 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 39.0 3.58e-01 89.2% 58.8%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 42.0 4.14e-01 98.5% 82.9%
3709736 5.1.4.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7048 0.53 45.0 2.84e-01 100.0% 21.3%
3417047 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.52 42.0 4.24e-01 95.4% 93.8%
1156585 5092.1.1.4 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › Caudo_bapla_RBP 0.52 43.0 3.64e-01 95.4% 76.1%
4008807 223.1.1.52 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE9 0.51 43.0 3.01e-01 100.0% 54.3%
3556872 76.1.1.2 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.51 31.0 2.45e-01 81.5% 25.5%
4504493 325.1.8.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.51 39.0 3.60e-01 83.1% 89.4%
5034335 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.50 37.0 3.45e-01 92.3% 62.4%
D2 medium residues 70-113
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f7uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.82 73.0 4.27e-01 100.0% 12.7%
1cukA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.81 48.0 3.96e-01 100.0% 34.2%
5ubvA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.77 61.0 5.25e-01 88.6% 54.9%
3d2fA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.76 63.0 5.28e-01 100.0% 53.6%
3euwA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.76 47.0 3.00e-01 72.7% 13.1%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.75 63.0 5.46e-01 100.0% 60.3%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.74 60.0 6.05e-01 100.0% 93.3%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.74 54.0 4.34e-01 79.5% 42.0%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.73 53.0 3.44e-01 77.3% 17.8%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 51.0 3.89e-01 72.7% 39.4%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.73 52.0 4.24e-01 81.8% 42.9%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 61.0 4.97e-01 97.7% 49.4%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 53.0 3.86e-01 79.5% 30.9%
4a3vB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.72 56.0 4.84e-01 88.6% 54.2%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.72 45.0 4.19e-01 72.7% 50.0%
4bwcA02 1.10.439.20 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 0.72 54.0 3.97e-01 100.0% 30.8%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 62.0 5.08e-01 100.0% 82.9%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.71 53.0 4.71e-01 79.5% 56.5%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 59.0 3.64e-01 100.0% 22.9%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 52.0 5.19e-01 84.1% 78.7%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 52.0 4.30e-01 79.5% 52.1%
2x8aA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 58.0 4.82e-01 97.7% 98.8%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.68 56.0 4.67e-01 100.0% 62.4%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.68 50.0 4.01e-01 79.5% 44.8%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.68 57.0 4.60e-01 95.5% 91.9%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.68 47.0 3.81e-01 79.5% 37.6%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 50.0 4.26e-01 81.8% 49.3%
3mc1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 44.0 3.99e-01 75.0% 46.3%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 50.0 3.85e-01 88.6% 37.5%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.66 54.0 4.37e-01 100.0% 63.9%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.66 58.0 4.30e-01 100.0% 80.7%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 54.0 3.67e-01 97.7% 26.1%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 51.0 4.18e-01 88.6% 45.9%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 48.0 3.96e-01 79.5% 50.6%
1kf6D00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.64 51.0 3.73e-01 88.6% 32.8%
4ywoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 51.0 3.42e-01 100.0% 29.7%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.63 55.0 4.59e-01 100.0% 75.9%
2ex3B02 1.20.1270.230 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain 0.63 52.0 4.36e-01 95.5% 58.0%
1yz5B00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.63 47.0 2.98e-01 81.8% 19.2%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.42e-01 86.4% 73.2%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.62 50.0 4.30e-01 100.0% 91.4%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.62 49.0 4.72e-01 88.6% 76.5%
4bkxA01 4.10.1240.50 Few Secondary Structures › Irregular › Hormone receptor fold › 0.61 48.0 3.83e-01 100.0% 38.9%
2pg0A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.61 45.0 3.38e-01 81.8% 33.3%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.61 52.0 4.64e-01 95.5% 67.2%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.61 53.0 3.98e-01 97.7% 42.1%
1ugoA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.60 45.0 3.48e-01 81.8% 47.5%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 45.0 3.31e-01 88.6% 73.8%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.60 53.0 3.17e-01 100.0% 14.6%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.60 50.0 4.45e-01 100.0% 83.8%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 52.0 3.71e-01 100.0% 33.6%
4d9gA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 48.0 3.56e-01 93.2% 66.4%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.59 47.0 4.33e-01 90.9% 67.8%
3npiB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 48.0 3.18e-01 100.0% 63.8%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.58 42.0 3.88e-01 79.5% 62.3%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.58 48.0 3.93e-01 90.9% 81.2%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 47.0 3.40e-01 100.0% 87.5%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.57 47.0 4.16e-01 90.9% 62.5%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.57 46.0 4.03e-01 88.6% 60.0%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.57 47.0 4.18e-01 100.0% 63.2%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4178096 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.87 77.0 5.71e-01 97.7% 41.0%
2731713 148.1.3.203 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.85 71.0 5.10e-01 100.0% 33.9%
3279140 191.1.1.18 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_14 0.84 75.0 5.40e-01 100.0% 36.7%
3783792 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.84 73.0 4.38e-01 100.0% 15.0%
3591291 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.84 74.0 4.72e-01 100.0% 21.6%
3330798 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.84 74.0 4.39e-01 100.0% 14.8%
3702209 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.83 68.0 5.42e-01 93.2% 45.6%
3415947 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.82 71.0 4.35e-01 100.0% 16.7%
3253107 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.82 71.0 4.31e-01 100.0% 16.1%
3227634 101.38.1.1 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › C_tripleX 0.82 66.0 5.89e-01 100.0% 63.1%
3789006 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.82 71.0 4.23e-01 100.0% 14.5%
3601018 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.81 67.0 5.31e-01 93.2% 45.6%
3385053 5076.2.1.10 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 0.81 59.0 3.55e-01 100.0% 12.6%
4099186 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.81 65.0 4.23e-01 97.7% 20.5%
3527261 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.81 68.0 4.14e-01 100.0% 15.0%
3194862 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.81 70.0 4.18e-01 100.0% 14.4%
4961852 148.1.3.50 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6_lid 0.79 71.0 5.79e-01 100.0% 98.8%
4318142 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.79 64.0 4.52e-01 100.0% 29.3%
5005233 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.79 66.0 3.88e-01 93.2% 12.2%
3829766 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.79 68.0 4.15e-01 100.0% 16.7%
3392913 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.78 67.0 4.08e-01 100.0% 15.8%
3248805 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.78 67.0 4.05e-01 100.0% 14.4%
3658518 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.78 68.0 4.09e-01 100.0% 15.3%
3597232 5076.1.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.78 65.0 3.95e-01 100.0% 14.4%
5022668 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.78 64.0 4.48e-01 100.0% 29.3%
3680891 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.77 67.0 4.18e-01 100.0% 18.0%
3693609 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.76 66.0 5.61e-01 100.0% 60.3%
3649222 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.76 63.0 3.69e-01 100.0% 11.5%
3833866 2004.1.1.24 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.76 63.0 3.43e-01 100.0% 5.2%
3738529 1075.4.1.36 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › EMP70 0.76 66.0 3.96e-01 100.0% 39.7%
3269813 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.76 65.0 3.91e-01 100.0% 15.0%
5023752 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.75 62.0 5.22e-01 93.2% 54.7%
3349480 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.75 62.0 4.91e-01 100.0% 45.6%
3687403 3567.1.1.104 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › EMP70 0.74 64.0 4.49e-01 100.0% 84.8%
3312745 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 63.0 4.22e-01 100.0% 26.2%
5066143 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.72 53.0 4.43e-01 79.5% 46.7%
5068383 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.71 59.0 3.91e-01 100.0% 22.5%
3299872 5063.1.1.3 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › NADH-u_ox-rdase 0.71 54.0 4.40e-01 100.0% 43.5%
2859099 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.71 59.0 4.88e-01 100.0% 50.0%
3444553 143.1.1.0 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.70 62.0 5.76e-01 100.0% 87.3%
3278955 6169.1.1.0 ↗ extended segments › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 0.70 57.0 5.89e-01 97.7% 100.0%
3261624 3470.1.1.0 ↗ extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.70 58.0 5.70e-01 100.0% 98.0%
3331967 397.7.1.3 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › DUF842 0.70 57.0 5.49e-01 90.9% 96.0%
4996452 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.70 59.0 3.52e-01 100.0% 13.0%
4276746 192.1.1.40 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › VMA21 0.70 57.0 4.98e-01 100.0% 60.3%
3455488 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.69 60.0 5.48e-01 100.0% 95.0%
3643105 6026.1.1.1 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 0.69 57.0 3.96e-01 100.0% 27.1%
3392260 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.69 55.0 4.83e-01 100.0% 58.6%
3260418 5043.1.1.0 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.68 54.0 4.85e-01 100.0% 61.5%
3904347 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.66 58.0 4.89e-01 100.0% 58.7%
3514607 3226.1.1.3 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › HCO3_cotransp 0.65 55.0 3.30e-01 95.5% 17.4%
3639079 3826.1.1.17 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › COPIIcoated_ERV 0.65 57.0 5.31e-01 100.0% 81.8%
3347379 3470.1.1.26 ↗ extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 0.65 56.0 4.96e-01 100.0% 87.7%
4958485 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.64 57.0 3.45e-01 100.0% 67.5%
3967002 3843.1.1.27 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › COX4_pro 0.62 52.0 4.26e-01 97.7% 52.9%
4952782 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.62 53.0 4.27e-01 97.7% 51.8%
3589953 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.61 51.0 3.11e-01 100.0% 72.9%
3287859 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.61 52.0 3.91e-01 100.0% 39.1%
5010354 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.59 50.0 4.13e-01 97.7% 55.0%
5016145 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.58 49.0 4.18e-01 97.7% 58.7%
3187479 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.58 50.0 3.96e-01 97.7% 48.9%
3261428 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.57 49.0 3.56e-01 100.0% 33.1%
3992628 6026.1.1.22 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › PF29335 0.55 44.0 3.84e-01 100.0% 56.2%