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NC_053239.1__YP_010002026.1__J1766_gp62__00062

Bact-Vir

NC_053239.1__YP_010002026.1__J1766_gp62__00062

Identity

Accession:
NC_053239 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Kroosvirus› Gordonia_phage_Bizzy

TaxID: 2483667

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-66
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gouA02 2.30.29.200 Mainly Beta › Roll › PH-domain like › 0.60 44.0 3.28e-01 76.6% 85.4%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 42.0 3.74e-01 84.4% 53.3%
4d8pB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.53 35.0 3.03e-01 87.5% 42.2%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.47e-01 81.2% 67.0%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.36e-01 90.6% 91.2%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.52 46.0 4.09e-01 100.0% 82.4%
4ka7A01 1.10.1370.40 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.52 38.0 2.32e-01 79.7% 14.9%
4ruwA01 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 35.0 2.38e-01 73.4% 78.3%
1tu5A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.49e-01 98.4% 60.6%
1a49A01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.51 39.0 3.02e-01 92.2% 95.5%
4h5uA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.50 41.0 2.67e-01 90.6% 87.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3665695 2498.1.1.6 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.64 49.0 2.94e-01 82.8% 54.0%
4971051 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 38.0 2.36e-01 87.5% 11.1%
3934407 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.62 46.0 3.63e-01 87.5% 40.0%
4143427 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.60 48.0 3.45e-01 87.5% 49.2%
4976068 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 40.0 2.38e-01 73.4% 9.4%
4012853 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 48.0 3.41e-01 92.2% 68.5%
4649881 213.1.1.8 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HlyC 0.55 46.0 3.53e-01 92.2% 74.1%
3710045 212.1.1.10 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH 0.54 45.0 3.29e-01 93.8% 37.2%
3726757 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 40.0 2.63e-01 89.1% 17.8%
3736666 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 46.0 2.67e-01 100.0% 50.7%
1144815 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.51 39.0 3.68e-01 85.9% 80.0%
4565003 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.51 45.0 3.58e-01 100.0% 53.1%
11077 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 36.0 2.92e-01 76.6% 91.2%
4024629 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 25.0 3.00e-01 81.2% 67.5%
5079566 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 46.0 2.69e-01 100.0% 15.6%
5026579 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 46.0 2.85e-01 100.0% 23.2%
5045400 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.50 45.0 2.75e-01 100.0% 19.5%
3399254 206.1.1.55 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.50 45.0 2.76e-01 100.0% 33.3%
5066104 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.50 45.0 2.63e-01 100.0% 14.6%
D2 high residues 83-134
PDB
Domain cluster: rep: NC_053211.1__YP_010001517.1__J1598_gp55__00055__D43-93