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NC_053240.1__YP_010002057.1__J1767_gp08__00008

Bact-Vir

NC_053240.1__YP_010002057.1__J1767_gp08__00008

Identity

Accession:
NC_053240 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Kroosvirus› Gordonia_phage_Tangerine

TaxID: 2591120

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-97
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 5.05e-01 74.4% 88.1%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 48.0 4.79e-01 70.7% 67.1%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.71 47.0 4.89e-01 89.0% 72.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 46.0 4.97e-01 73.2% 79.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 5.14e-01 85.4% 86.4%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.28e-01 78.0% 88.3%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 5.34e-01 81.7% 91.4%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 5.17e-01 84.1% 98.3%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.75e-01 70.7% 95.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 5.25e-01 96.3% 94.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.98e-01 97.6% 98.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 5.08e-01 90.2% 97.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 5.02e-01 87.8% 82.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.85e-01 84.1% 96.6%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 4.98e-01 86.6% 86.5%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.30e-01 85.4% 71.1%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 45.0 4.63e-01 86.6% 79.5%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.61 49.0 4.56e-01 86.6% 79.4%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.65e-01 100.0% 75.2%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.54 43.0 4.51e-01 89.0% 92.1%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 41.0 3.96e-01 80.5% 82.8%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 4.01e-01 84.1% 90.8%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.79e-01 98.8% 55.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2106277 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.76 51.0 4.38e-01 70.7% 46.0%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.75 53.0 4.82e-01 73.2% 57.1%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 46.0 4.33e-01 86.6% 53.7%
3198731 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.73 54.0 4.64e-01 78.0% 52.3%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.72 49.0 5.41e-01 100.0% 87.7%
3624441 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.72 49.0 4.05e-01 100.0% 41.4%
2321269 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.71 50.0 5.05e-01 74.4% 88.1%
3785385 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 43.0 4.22e-01 86.6% 55.6%
4331473 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.71 50.0 5.12e-01 74.4% 75.0%
4242302 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.70 50.0 5.40e-01 74.4% 90.0%
140210 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 46.0 4.97e-01 73.2% 79.7%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.26e-01 73.2% 87.1%
3587259 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.68 50.0 4.89e-01 78.0% 86.7%
3989574 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.03e-01 79.3% 87.1%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 47.0 5.33e-01 86.6% 96.7%
3778257 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.67 50.0 4.08e-01 98.8% 45.0%
3780847 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.67 56.0 4.62e-01 92.7% 53.3%
3244497 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.67 56.0 4.61e-01 92.7% 53.3%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.66 50.0 5.27e-01 95.1% 89.3%
135648 4.1.1.142 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.63 45.0 4.91e-01 100.0% 95.4%
3662854 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.62 52.0 4.13e-01 92.7% 45.5%
4121981 4.1.1.325 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.60 55.0 4.73e-01 100.0% 76.8%
4400642 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.59 45.0 4.52e-01 81.7% 97.6%
4883261 4.1.1.76 ↗ beta barrels › SH3 › SH3 › SH3 › NdhO 0.59 49.0 4.71e-01 90.2% 88.4%
4200330 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.59 53.0 4.59e-01 100.0% 76.0%
3772638 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.58 49.0 4.93e-01 93.9% 95.1%
3404643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.47e-01 90.2% 95.7%
4646501 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 43.0 3.49e-01 86.6% 44.5%
3448975 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.55 39.0 4.31e-01 86.6% 95.4%