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NC_053243.1__YP_010002335.1__J1770_gp29__00029
Bact-VirNC_053243.1__YP_010002335.1__J1770_gp29__00029
Identity
- Accession:
- NC_053243 ↗
- Kingdom:
- phage
Quality
48.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stackebrandtviridae›
Leonardvirus›
Gordonia_phage_EMoore
TaxID: 2656534
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1412-1555
Domain cluster:
rep: NC_073481.1__YP_010756090.1__QEJ66_gp08__00008__D21-190
D2
high
residues 1617-1698
D3
medium
residues 27-108
D4
medium
residues 109-219
D5
medium
residues 744-802
D6
medium
residues 803-974
D7
medium
residues 1216-1294
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.62 | 32.0 | 3.43e-01 | 88.6% | 56.1% |
| 1s14B00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.58 | 51.0 | 3.98e-01 | 98.7% | 51.1% |
| 3d2wA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 37.0 | 3.87e-01 | 98.7% | 70.8% |
| 1vi7A01 | 3.30.230.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain | 0.58 | 50.0 | 4.23e-01 | 97.5% | 66.7% |
| 3cwvA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.58 | 50.0 | 3.78e-01 | 98.7% | 50.5% |
| 3r96B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 35.0 | 2.78e-01 | 93.7% | 28.9% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.56 | 40.0 | 3.79e-01 | 100.0% | 62.5% |
| 3cloC01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 42.0 | 3.21e-01 | 82.3% | 71.5% |
| 2mkcA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 40.0 | 3.52e-01 | 100.0% | 51.7% |
| 1qm9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 37.0 | 3.51e-01 | 100.0% | 57.1% |
| 3qf7A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 2.94e-01 | 86.1% | 79.6% |
| 6czfA01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.54 | 45.0 | 3.09e-01 | 96.2% | 81.6% |
| 1ao0A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 44.0 | 3.10e-01 | 97.5% | 81.7% |
| 1wyzA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.52 | 44.0 | 4.01e-01 | 94.9% | 98.2% |
| 1xv2C01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.52 | 44.0 | 3.97e-01 | 96.2% | 70.3% |
| 2kvkA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 38.0 | 3.22e-01 | 82.3% | 51.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4991848 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.64 | 43.0 | 4.30e-01 | 100.0% | 68.8% |
| 3181584 | 884.1.1.0 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain | 0.57 | 49.0 | 4.41e-01 | 100.0% | 80.0% |
| 4184400 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 46.0 | 4.04e-01 | 96.2% | 89.2% |
| 3672141 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.56 | 39.0 | 4.10e-01 | 100.0% | 82.9% |
| None | — | 0.54 | 45.0 | 3.30e-01 | 96.2% | 80.8% | |
| None | — | 0.53 | 44.0 | 3.25e-01 | 96.2% | 81.7% | |
| 4989851 | 2007.1.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like | 0.52 | 41.0 | 3.08e-01 | 84.8% | 70.3% |
| 4366164 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.52 | 38.0 | 2.47e-01 | 79.7% | 26.1% |
| None | — | 0.52 | 38.0 | 2.48e-01 | 79.7% | 37.3% | |
| 4958502 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.52 | 35.0 | 3.80e-01 | 91.1% | 86.2% |
| 3232262 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.51 | 40.0 | 3.66e-01 | 87.3% | 73.6% |
| 4958779 | 4111.1.1.1 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AAL_decarboxy | 0.51 | 42.0 | 3.18e-01 | 96.2% | 36.6% |
| 3286547 | 223.3.1.0 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins | 0.50 | 38.0 | 3.06e-01 | 82.3% | 85.6% |