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NC_053244.1__YP_010002418.1__J1771_gp30__00030

Bact-Vir

NC_053244.1__YP_010002418.1__J1771_gp30__00030

Identity

Accession:
NC_053244 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Leonardvirus› Gordonia_phage_MelBins

TaxID: 2656540

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 82-193
PDB
Domain cluster: rep: NC_071004.1__YP_010675483.1__PQD13_gp54__00054__D91-174
D2 medium residues 1-55
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ld7A00 6.10.160.20 Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.66 45.0 3.83e-01 78.2% 42.6%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.65 47.0 4.03e-01 96.4% 48.3%
3cs1A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 44.0 3.56e-01 96.4% 41.3%
3d2yA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.57 41.0 3.69e-01 80.0% 65.5%
4fqgA02 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.57 43.0 4.18e-01 92.7% 73.8%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 41.0 3.64e-01 85.5% 89.2%
3q45A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 41.0 3.14e-01 83.6% 87.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3190964 130.1.1.20 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH 0.72 51.0 5.18e-01 78.2% 76.4%
4120640 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 52.0 3.55e-01 89.1% 22.6%
3268404 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.69 55.0 5.40e-01 90.9% 81.7%
4994658 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.67 52.0 3.63e-01 85.5% 28.1%
3272915 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.67 55.0 5.52e-01 90.9% 90.9%
3793577 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.62 49.0 3.66e-01 96.4% 33.1%
4224103 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.62 42.0 3.04e-01 90.9% 24.4%
5034788 103.6.1.0 ↗ alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain 0.61 41.0 4.45e-01 85.5% 84.4%
3448615 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.61 53.0 4.40e-01 100.0% 64.0%
2393055 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.59 45.0 3.73e-01 83.6% 59.6%
3562501 3075.1.1.0 ↗ a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.58 36.0 3.24e-01 94.5% 43.8%
3591815 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.58 41.0 3.77e-01 96.4% 56.0%
4533621 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.58 41.0 3.14e-01 98.2% 29.3%
3805362 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 41.0 2.87e-01 92.7% 27.9%