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NC_053247.1__YP_010002677.1__J1774_gp19__00019

Bact-Vir

NC_053247.1__YP_010002677.1__J1774_gp19__00019

Identity

Accession:
NC_053247 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-72
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vr9A01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.72 47.0 4.53e-01 100.0% 59.4%
8gpsA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.70 46.0 3.70e-01 100.0% 35.5%
5iipA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.70 45.0 3.53e-01 100.0% 31.9%
2ouxA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.69 45.0 3.44e-01 100.0% 29.5%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.69 45.0 3.38e-01 100.0% 27.9%
3l2bA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.68 45.0 3.52e-01 100.0% 32.5%
2nycA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.68 44.0 3.39e-01 100.0% 29.2%
4dqwA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.68 44.0 3.55e-01 100.0% 33.6%
3kpbA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.68 44.0 3.49e-01 100.0% 31.9%
1yavB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.68 43.0 3.22e-01 100.0% 26.7%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.68 44.0 2.59e-01 100.0% 8.0%
2yziB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.68 43.0 3.26e-01 100.0% 27.4%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 44.0 3.40e-01 100.0% 29.9%
6h1wA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 43.0 3.40e-01 100.0% 31.6%
1pvmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 44.0 3.07e-01 100.0% 21.3%
3ocoA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 44.0 3.32e-01 100.0% 27.9%
3kxrA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 44.0 3.37e-01 100.0% 30.2%
4hg0A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 44.0 3.22e-01 100.0% 25.9%
3lv9A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.66 43.0 3.33e-01 100.0% 29.2%
3kh5A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.66 43.0 3.22e-01 100.0% 26.8%
2p9mB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.65 43.0 3.31e-01 100.0% 29.5%
1r0vA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 43.0 3.93e-01 100.0% 50.6%
3ocmB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.65 43.0 3.18e-01 100.0% 26.0%
3lhhA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.65 42.0 3.40e-01 98.2% 35.2%
7ahhC02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.65 43.0 3.48e-01 98.2% 36.2%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 43.0 3.31e-01 100.0% 31.0%
7mi4A01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.64 51.0 3.55e-01 100.0% 26.2%
1nf7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 45.0 2.62e-01 73.2% 79.7%
3kh5A02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 41.0 3.14e-01 100.0% 27.9%
6smoC01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.60 41.0 2.73e-01 71.4% 37.4%
2eiyB02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.59 43.0 3.20e-01 100.0% 28.0%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 49.0 3.57e-01 100.0% 37.8%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.57 43.0 2.98e-01 83.9% 35.8%
4esjA01 3.40.210.30 Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › Dam replacing family, catalytic PD-(D/E)XK domain 0.56 43.0 3.12e-01 100.0% 30.1%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.55 36.0 3.25e-01 100.0% 46.3%
3fhmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 36.0 2.84e-01 100.0% 27.9%
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.55 46.0 3.54e-01 100.0% 58.9%
1j3jB00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.55 44.0 3.02e-01 91.1% 79.2%
1fvpA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.54 43.0 2.82e-01 85.7% 46.8%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 45.0 3.60e-01 100.0% 75.4%
4oc8A01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.53 42.0 3.01e-01 100.0% 44.7%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.52 38.0 2.78e-01 78.6% 97.5%
2yxlA04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 46.0 3.12e-01 100.0% 50.2%
2fgyA03 3.30.1330.140 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain 0.52 42.0 3.47e-01 98.2% 94.9%
1xubA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 44.0 3.29e-01 100.0% 41.9%
3guvA00 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.51 44.0 3.23e-01 96.4% 36.9%
4jgiB02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.50 44.0 3.38e-01 98.2% 84.1%
4ftfA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.50 41.0 3.47e-01 100.0% 64.2%
1bwzA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.50 36.0 2.78e-01 100.0% 33.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931904 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.74 48.0 3.51e-01 100.0% 26.2%
4952601 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.71 47.0 3.56e-01 100.0% 30.4%
3605286 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.71 53.0 4.43e-01 100.0% 46.0%
5063100 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.70 46.0 3.62e-01 100.0% 33.0%
3032600 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.70 46.0 3.51e-01 100.0% 29.9%
5059208 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.70 46.0 3.25e-01 100.0% 23.2%
3647972 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.70 46.0 3.20e-01 100.0% 21.7%
3220699 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.70 46.0 3.32e-01 100.0% 25.3%
4928870 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.70 46.0 3.38e-01 100.0% 27.1%
5074808 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.70 46.0 3.29e-01 100.0% 24.7%
5077917 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.69 53.0 4.15e-01 100.0% 39.2%
5077361 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.69 45.0 3.34e-01 100.0% 26.6%
2577268 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.69 45.0 3.47e-01 100.0% 30.9%
2774697 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.69 44.0 3.39e-01 100.0% 28.7%
5004756 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 45.0 3.42e-01 100.0% 29.2%
3970509 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 45.0 3.30e-01 100.0% 26.2%
5011930 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 45.0 3.52e-01 100.0% 33.0%
4956660 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 45.0 3.26e-01 100.0% 25.3%
5016350 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 45.0 3.44e-01 100.0% 30.4%
3948686 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 44.0 3.28e-01 100.0% 27.4%
1546092 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 47.0 3.56e-01 100.0% 31.3%
4930058 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 44.0 3.34e-01 100.0% 28.1%
5083459 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 44.0 3.34e-01 100.0% 28.1%
5005780 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.67 51.0 4.20e-01 100.0% 44.8%
4941502 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 44.0 3.25e-01 100.0% 27.1%
5016197 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 44.0 3.51e-01 100.0% 34.5%
5056107 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 44.0 3.37e-01 100.0% 29.2%
3266455 2003.1.5.74 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltrans_SAM 0.66 45.0 2.73e-01 71.4% 95.3%
None 0.65 47.0 3.44e-01 100.0% 28.7%
5019941 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 46.0 3.58e-01 100.0% 33.1%
3839710 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.64 43.0 3.24e-01 100.0% 28.1%
3950803 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.64 46.0 3.04e-01 100.0% 17.6%
4025996 102.1.3.7 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Nrap_D5 0.63 45.0 3.20e-01 75.0% 77.1%
4968936 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.63 48.0 3.28e-01 100.0% 22.3%
4950977 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.61 42.0 3.15e-01 100.0% 28.6%
3968592 7581.1.1.0 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.60 41.0 3.13e-01 71.4% 48.9%
4060254 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.60 49.0 3.26e-01 100.0% 21.2%
2756766 2008.2.1.2 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 0.60 46.0 3.59e-01 100.0% 36.6%
3960585 282.1.1.0 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.59 46.0 3.49e-01 100.0% 35.6%
3710559 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 38.0 2.74e-01 100.0% 20.6%
3956657 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 45.0 3.46e-01 100.0% 35.6%
4986405 7582.1.1.0 a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD 0.58 40.0 3.07e-01 100.0% 30.0%
5013125 327.6.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P 0.57 44.0 3.70e-01 100.0% 49.5%
3712369 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.57 41.0 2.94e-01 100.0% 23.8%
3186521 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 48.0 3.66e-01 100.0% 43.4%
4240947 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 47.0 4.42e-01 100.0% 74.3%
3603331 327.4.1.0 a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain 0.57 44.0 3.67e-01 87.5% 52.4%
3588355 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.56 42.0 3.60e-01 83.9% 50.0%
3957352 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 43.0 3.58e-01 100.0% 45.0%
4670642 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.56 46.0 3.85e-01 100.0% 49.6%
3272897 2492.1.1.11 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.54 39.0 2.80e-01 100.0% 22.4%
4931961 4126.1.1.5 a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA_2 0.54 44.0 3.59e-01 100.0% 50.4%
4599467 4126.1.1.5 a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA_2 0.53 44.0 3.27e-01 98.2% 61.0%
3737984 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.52 45.0 3.78e-01 100.0% 96.0%
3199294 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.52 41.0 2.52e-01 91.1% 51.3%
3176787 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.51 45.0 2.86e-01 100.0% 88.5%
3960088 4126.1.1.5 a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA_2 0.51 43.0 3.27e-01 100.0% 41.4%
4166163 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.51 43.0 2.96e-01 96.4% 63.5%