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NC_053247.1__YP_010002713.1__J1774_gp55__00055

Bact-Vir

NC_053247.1__YP_010002713.1__J1774_gp55__00055

Identity

Accession:
NC_053247 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-87
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23785.2 best DUF7171 104.4 7.90e-30 100.0% 40.2%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.68 57.0 3.91e-01 96.4% 30.5%
1yqyA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.66 57.0 3.86e-01 96.4% 26.0%
1e9gB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.65 47.0 3.02e-01 98.2% 15.5%
1qs1A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.64 52.0 3.67e-01 96.4% 31.0%
4h03A02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.63 52.0 3.62e-01 96.4% 30.2%
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.63 55.0 3.70e-01 100.0% 27.7%
3hhjB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 54.0 4.10e-01 100.0% 67.9%
2wn5A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.62 53.0 3.69e-01 100.0% 29.4%
3eesA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 53.0 4.05e-01 100.0% 65.6%
4ebjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 43.0 3.34e-01 100.0% 32.8%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 54.0 4.03e-01 100.0% 61.5%
4dywA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 52.0 4.03e-01 100.0% 67.4%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 52.0 3.69e-01 100.0% 48.3%
2b0vA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 52.0 3.86e-01 100.0% 58.8%
2j3xA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.60 51.0 3.46e-01 100.0% 26.6%
3lw6A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.59 51.0 3.38e-01 100.0% 80.9%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 52.0 3.94e-01 100.0% 61.8%
3a6sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 50.0 3.89e-01 100.0% 66.4%
3gz8C01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 49.0 3.75e-01 100.0% 69.1%
6u7tA03 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 50.0 3.90e-01 100.0% 67.8%
2fkbC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 50.0 3.57e-01 100.0% 53.3%
3rh7A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 50.0 3.82e-01 100.0% 58.1%
3gwyB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 48.0 3.70e-01 100.0% 65.4%
1x51A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 47.0 3.59e-01 100.0% 65.7%
4xsgB00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.55 42.0 3.08e-01 96.4% 31.2%
6k93A00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.55 46.0 3.06e-01 96.4% 36.0%
5lddC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 48.0 3.38e-01 100.0% 38.7%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 3.48e-01 100.0% 45.0%
1yu9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 3.36e-01 100.0% 38.9%
3h95A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 45.0 3.49e-01 100.0% 61.8%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 47.0 3.31e-01 100.0% 39.5%
1ktgA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 45.0 3.45e-01 100.0% 66.4%
2bmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 47.0 3.27e-01 100.0% 34.5%
1d5cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 47.0 3.33e-01 100.0% 40.1%
5cfjA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 45.0 3.44e-01 100.0% 66.4%
2j4xA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 42.0 3.93e-01 100.0% 69.4%
2o5fB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 46.0 3.29e-01 98.2% 55.6%
5zliA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.52 44.0 3.65e-01 100.0% 73.6%
4hppA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.52 42.0 3.64e-01 100.0% 89.1%
2clsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.16e-01 100.0% 35.8%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 42.0 3.31e-01 100.0% 62.6%
8fwpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 2.91e-01 100.0% 51.8%
6jmgB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 3.12e-01 100.0% 37.6%
3regA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.14e-01 100.0% 57.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
7439 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.68 57.0 3.91e-01 96.4% 30.2%
4294371 237.1.1.14 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Anthrax-tox_M 0.67 58.0 3.66e-01 98.2% 18.6%
3987874 375.1.1.253 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.65 54.0 4.83e-01 98.2% 66.7%
4535633 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 50.0 4.58e-01 100.0% 64.0%
2034328 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.64 54.0 3.68e-01 96.4% 27.0%
2770556 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.64 54.0 3.66e-01 96.4% 26.3%
3963831 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.64 57.0 4.26e-01 100.0% 65.9%
7440 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.64 52.0 3.67e-01 96.4% 31.0%
143236 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.62 54.0 4.15e-01 100.0% 67.9%
5004416 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 54.0 4.41e-01 100.0% 77.1%
4156752 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.62 55.0 3.87e-01 100.0% 56.6%
359529 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.62 54.0 4.14e-01 100.0% 62.5%
5024576 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.61 53.0 3.95e-01 100.0% 62.1%
3264285 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.61 54.0 3.91e-01 100.0% 72.9%
3227724 7516.1.1.13 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_7C,Glyco_transf_7N 0.61 54.0 3.42e-01 100.0% 68.5%
5058171 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.61 52.0 4.02e-01 98.2% 65.9%
308110 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.61 50.0 3.45e-01 96.4% 26.4%
3503674 7516.1.1.13 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_7C,Glyco_transf_7N 0.61 53.0 3.42e-01 100.0% 72.2%
3975388 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.61 53.0 3.99e-01 100.0% 62.3%
3947875 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.61 53.0 4.05e-01 100.0% 66.9%
4031313 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.60 52.0 4.12e-01 100.0% 67.5%
3272028 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.60 52.0 3.98e-01 100.0% 69.2%
3947895 4.26.1.4 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › zf-IS66 0.60 48.0 4.44e-01 98.2% 70.0%
3970788 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.60 53.0 3.80e-01 100.0% 54.3%
5053953 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.60 52.0 3.90e-01 100.0% 66.4%
3977403 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.60 52.0 4.01e-01 98.2% 62.4%
3978281 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.60 52.0 3.99e-01 100.0% 66.9%
5027673 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.60 53.0 3.86e-01 100.0% 56.1%
3505905 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 43.0 4.50e-01 94.5% 86.0%
3926921 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.60 51.0 3.63e-01 100.0% 49.4%
3886084 237.1.1.2 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ART 0.59 52.0 3.47e-01 100.0% 26.2%
4954158 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.59 50.0 3.90e-01 100.0% 68.2%
5059111 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 50.0 3.87e-01 100.0% 69.2%
5030304 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 51.0 3.63e-01 100.0% 55.3%
5030096 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 51.0 3.68e-01 100.0% 56.4%
4025272 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 51.0 3.52e-01 100.0% 63.7%
4499818 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.57 49.0 3.94e-01 100.0% 73.0%
3196372 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 48.0 3.47e-01 100.0% 61.1%
4942594 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.56 48.0 3.76e-01 98.2% 67.5%
3587077 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.55 47.0 3.53e-01 100.0% 71.3%
5038971 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.55 47.0 3.75e-01 100.0% 68.1%
4185820 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.55 47.0 3.70e-01 100.0% 63.2%
4013718 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.55 47.0 3.28e-01 96.4% 67.4%
2557339 239.4.1.1 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N 0.55 47.0 3.82e-01 100.0% 75.9%
3543181 508.1.1.1 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 0.54 44.0 3.48e-01 100.0% 41.6%
4009092 2.1.1.139 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Slp 0.54 44.0 3.44e-01 100.0% 40.8%
3947390 2.5.1.1 beta barrels › OB-fold › Inorganic pyrophosphatase › Inorganic pyrophosphatase › Pyrophosphatase 0.54 43.0 3.21e-01 98.2% 31.5%
2032529 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.54 45.0 3.55e-01 100.0% 65.4%
168843 221.4.1.10 a+b two layers › beta-Grasp › Nudix › Nudix › DUF4743 0.54 43.0 2.86e-01 98.2% 34.4%
3479356 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.54 47.0 3.26e-01 100.0% 37.8%
3989066 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.54 45.0 3.39e-01 100.0% 68.7%
4929754 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.53 43.0 3.48e-01 100.0% 79.2%
3496006 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 46.0 3.46e-01 100.0% 48.5%
3777810 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 43.0 3.64e-01 96.4% 88.0%
4020199 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 46.0 3.02e-01 100.0% 28.4%
3547923 2004.1.1.249 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM3AP_GANP 0.52 45.0 2.95e-01 100.0% 52.0%
3786036 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 44.0 3.08e-01 100.0% 35.8%
4942348 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.51 44.0 3.43e-01 100.0% 98.4%
3879983 2004.1.1.249 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM3AP_GANP 0.51 43.0 2.74e-01 100.0% 41.3%
3758458 2004.1.1.118 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.51 44.0 2.99e-01 100.0% 41.4%
3485401 59.1.1.0 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.50 40.0 3.15e-01 100.0% 64.1%
5078689 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.50 43.0 3.01e-01 100.0% 55.3%