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NC_053248.1__YP_010002822.1__J1775_gp73__00073

Bact-Vir

NC_053248.1__YP_010002822.1__J1775_gp73__00073

Identity

Accession:
NC_053248 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Zitchvirus› Gordonia_phage_Zipp

TaxID: 2591212

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-83
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.65 37.0 3.31e-01 82.1% 40.9%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 47.0 3.83e-01 100.0% 43.0%
4izeA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 44.0 3.40e-01 77.6% 86.2%
4lk4A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 44.0 3.70e-01 85.1% 86.4%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 46.0 3.77e-01 100.0% 48.5%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.52 46.0 4.09e-01 98.5% 94.8%
2oq5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 35.0 3.09e-01 73.1% 70.2%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 41.0 3.73e-01 89.6% 100.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3317402 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.62 51.0 4.63e-01 91.0% 83.3%
4405359 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 48.0 4.68e-01 100.0% 100.0%
3702924 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.56 48.0 3.44e-01 100.0% 45.6%
3511457 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 41.0 3.33e-01 82.1% 75.6%
4945218 2008.1.1.141 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.55 40.0 3.23e-01 80.6% 87.6%
3988580 1.1.7.95 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 0.54 47.0 4.08e-01 100.0% 92.7%
3423505 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 47.0 4.18e-01 97.0% 96.8%
598 4.1.1.68 ↗ beta barrels › SH3 › SH3 › SH3 › YorP 0.54 43.0 4.25e-01 91.0% 85.9%
4001211 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.80e-01 82.1% 70.5%
3488003 1.1.7.35 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.53 45.0 4.25e-01 98.5% 97.6%
3544606 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.53 39.0 2.67e-01 83.6% 90.4%
4995699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.22e-01 92.5% 90.0%
3864744 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.68e-01 100.0% 79.2%
4585891 213.1.1.6 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.50 37.0 2.59e-01 80.6% 52.6%
5054149 806.1.1.1 ↗ a+b four layers › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › AFOR_N 0.50 43.0 3.00e-01 100.0% 40.8%