←Back to structures
NC_053507.1__YP_010012945.1__J4T96_gp130__00107
Bact-VirNC_053507.1__YP_010012945.1__J4T96_gp130__00107
Identity
- Accession:
- NC_053507 ↗
- Kingdom:
- phage
Quality
74.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vilmaviridae›
Faithunavirus›
Mycobacterium_phage_Finemlucis
TaxID: 2015844
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-44
Domain cluster:
rep: IMGVR_UViG_3300005835_000100-3300005835-Ga0078910_10067915__D4-44
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.85 | 65.0 | 4.51e-01 | 100.0% | 26.1% |
| 3goxA02 | 3.30.60.130 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.82 | 72.0 | 6.65e-01 | 95.3% | 77.8% |
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.80 | 68.0 | 5.32e-01 | 100.0% | 46.5% |
| 1pzwA00 | 3.40.1800.20 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › | 0.74 | 66.0 | 5.35e-01 | 100.0% | 82.5% |
| 2gviA03 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.72 | 48.0 | 5.25e-01 | 81.4% | 88.2% |
| 3d00A02 | 3.30.60.80 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.72 | 41.0 | 4.68e-01 | 81.4% | 80.0% |
| 3t7lA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 59.0 | 4.87e-01 | 93.0% | 56.8% |
| 2cjsC01 | 3.30.60.120 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.67 | 52.0 | 5.48e-01 | 86.0% | 97.4% |
| 2vp7A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 44.0 | 3.83e-01 | 79.1% | 62.1% |
| 1a7iA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.54 | 43.0 | 3.96e-01 | 95.3% | 88.3% |
| 2hf1A01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 37.0 | 3.52e-01 | 81.4% | 80.0% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979944 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.98 | 80.0 | 8.26e-01 | 86.0% | 92.5% |
| 3457383 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.86 | 72.0 | 5.53e-01 | 100.0% | 43.3% |
| 3211179 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.84 | 71.0 | 5.60e-01 | 100.0% | 47.1% |
| 3744636 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.84 | 71.0 | 5.49e-01 | 100.0% | 44.4% |
| 3482300 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.83 | 71.0 | 5.58e-01 | 100.0% | 47.1% |
| 4015300 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.83 | 77.0 | 5.99e-01 | 100.0% | 52.9% |
| 3928741 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.83 | 71.0 | 5.58e-01 | 100.0% | 47.1% |
| 3573660 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.83 | 70.0 | 5.52e-01 | 100.0% | 47.1% |
| 3397474 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.80 | 64.0 | 6.60e-01 | 95.3% | 92.5% |
| 3259718 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.80 | 67.0 | 4.98e-01 | 100.0% | 38.1% |
| 4941565 | 377.1.1.135 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7685 | 0.80 | 64.0 | 6.59e-01 | 100.0% | 95.0% |
| 3891438 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.80 | 67.0 | 5.12e-01 | 100.0% | 42.1% |
| 3636589 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.77 | 63.0 | 4.94e-01 | 100.0% | 43.3% |
| 3962784 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 54.0 | 5.98e-01 | 81.4% | 91.4% |
| 3607247 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 56.0 | 6.03e-01 | 88.4% | 97.1% |
| 3395505 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.75 | 58.0 | 5.73e-01 | 95.3% | 82.2% |
| 3567692 | 376.1.3.85 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Znf_SCAND3 | 0.75 | 67.0 | 6.37e-01 | 100.0% | 90.0% |
| 3181845 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.75 | 57.0 | 5.40e-01 | 86.0% | 70.0% |
| 3233854 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 50.0 | 4.94e-01 | 88.4% | 66.7% |
| 3305661 | 376.1.1.26 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_4 | 0.74 | 62.0 | 5.32e-01 | 100.0% | 58.6% |
| 3926338 | 376.1.1.94 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_IRF-2BP1_2 | 0.73 | 62.0 | 4.75e-01 | 100.0% | 43.2% |
| 8199 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 48.0 | 5.28e-01 | 81.4% | 90.9% |
| 3468455 | 376.1.3.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX | 0.72 | 56.0 | 5.76e-01 | 93.0% | 92.5% |
| 3701455 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 51.0 | 4.69e-01 | 88.4% | 60.0% |
| 5008357 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.71 | 47.0 | 5.10e-01 | 81.4% | 85.7% |
| 3671431 | 376.1.1.40 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 | 0.70 | 54.0 | 5.38e-01 | 100.0% | 84.4% |
| 3716795 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.70 | 52.0 | 5.65e-01 | 88.4% | 100.0% |
| 3818617 | 376.1.1.103 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 | 0.69 | 55.0 | 5.17e-01 | 100.0% | 72.7% |
| 3799902 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.69 | 51.0 | 5.05e-01 | 93.0% | 77.8% |
| 3646133 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 53.0 | 5.22e-01 | 86.0% | 80.0% |
| 4990133 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.69 | 54.0 | 4.97e-01 | 86.0% | 67.3% |
| 4939301 | 931.1.1.0 ↗ | few secondary structure elements › Metallothionein › Metallothionein › Metallothionein | 0.69 | 46.0 | 4.98e-01 | 81.4% | 100.0% |
| 4068879 | 375.1.1.235 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADD_ATRX | 0.69 | 55.0 | 5.68e-01 | 86.0% | 92.5% |
| 5033522 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 56.0 | 5.44e-01 | 100.0% | 84.0% |
| 3320011 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.68 | 52.0 | 5.21e-01 | 93.0% | 82.2% |
| 3211971 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.67 | 53.0 | 5.47e-01 | 100.0% | 100.0% |
| 3566304 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.67 | 52.0 | 5.42e-01 | 88.4% | 92.5% |
| 3197592 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 57.0 | 4.90e-01 | 93.0% | 61.5% |
| 3636674 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.66 | 57.0 | 5.44e-01 | 93.0% | 81.6% |
| 5019399 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.66 | 58.0 | 5.39e-01 | 100.0% | 98.2% |
| 4977157 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.65 | 51.0 | 5.12e-01 | 93.0% | 84.4% |
| 3301048 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.65 | 51.0 | 5.23e-01 | 93.0% | 95.0% |
| 3323549 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.64 | 52.0 | 4.82e-01 | 95.3% | 70.9% |
| 3846283 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.64 | 51.0 | 4.94e-01 | 95.3% | 78.0% |
| 5059659 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.63 | 50.0 | 5.13e-01 | 86.0% | 95.0% |
| 3372361 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.63 | 48.0 | 4.90e-01 | 86.0% | 92.5% |
| 5049855 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 48.0 | 4.46e-01 | 95.3% | 66.7% |
| 3255059 | 375.1.1.297 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-MYND | 0.61 | 43.0 | 4.74e-01 | 83.7% | 100.0% |
| 4946657 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.60 | 53.0 | 4.66e-01 | 100.0% | 73.8% |
| 3385531 | 377.1.1.31 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS | 0.59 | 47.0 | 4.66e-01 | 93.0% | 86.7% |
| 4562058 | 377.1.1.31 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS | 0.59 | 46.0 | 4.62e-01 | 93.0% | 86.7% |
| 3177203 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.59 | 41.0 | 4.15e-01 | 83.7% | 75.6% |
| 3706927 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.57 | 48.0 | 4.40e-01 | 100.0% | 93.3% |
| 3300469 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.56 | 41.0 | 4.02e-01 | 93.0% | 74.0% |
| 3936911 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 46.0 | 4.38e-01 | 93.0% | 92.0% |
| 5071141 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.55 | 45.0 | 4.46e-01 | 93.0% | 88.9% |
| 5010149 | 377.1.1.131 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TRASH_HVO_1752_C | 0.51 | 37.0 | 3.85e-01 | 93.0% | 95.0% |
| 4309282 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.50 | 41.0 | 2.77e-01 | 95.3% | 93.2% |
D2
high
residues 53-143
Domain cluster:
rep: rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00175__D96-187
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jcjB01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.65 | 35.0 | 4.12e-01 | 82.4% | 75.4% |
| 8dtqA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 39.0 | 4.12e-01 | 72.5% | 74.4% |
| 6wngA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.58 | 46.0 | 3.32e-01 | 85.7% | 90.4% |
| 2cq8A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.56 | 32.0 | 3.41e-01 | 76.9% | 63.0% |
| 2jbrA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 39.0 | 3.11e-01 | 74.7% | 56.8% |
| 3mebA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 42.0 | 3.88e-01 | 83.5% | 79.3% |
| 1yfmA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.53 | 47.0 | 3.35e-01 | 98.9% | 93.3% |
| 3a2vD02 | 3.30.1020.10 | Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2 | 0.51 | 35.0 | 3.47e-01 | 90.1% | 67.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938133 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.86 | 73.0 | 7.61e-01 | 90.1% | 96.5% |
| 3397473 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.75 | 50.0 | 4.50e-01 | 84.6% | 51.7% |
| 3489023 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.73 | 50.0 | 4.49e-01 | 85.7% | 53.3% |
| 4966684 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 44.0 | 5.35e-01 | 82.4% | 93.3% |
| 3843819 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.67 | 31.0 | 3.41e-01 | 73.6% | 50.7% |
| 4864393 | 4952.1.1.1 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 | 0.64 | 46.0 | 3.37e-01 | 75.8% | 93.3% |
| 3561303 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.61 | 52.0 | 4.22e-01 | 92.3% | 79.4% |
| 3804095 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.59 | 50.0 | 4.20e-01 | 93.4% | 89.9% |
| 3575349 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.59 | 47.0 | 3.33e-01 | 86.8% | 84.8% |
| None | — | 0.58 | 47.0 | 3.38e-01 | 86.8% | 92.8% | |
| 5026102 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.58 | 46.0 | 3.35e-01 | 86.8% | 92.8% |
| 4627808 | 310.1.1.2 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N | 0.57 | 35.0 | 3.18e-01 | 74.7% | 46.7% |
| 3748350 | 4305.1.1.1 ↗ | a+b two layers › GTF2I-like repeat › GTF2I-like repeat › GTF2I-like repeat › GTF2I | 0.57 | 44.0 | 4.29e-01 | 86.8% | 82.7% |
| 3413090 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.55 | 40.0 | 4.22e-01 | 75.8% | 84.3% |
| 4939512 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.54 | 39.0 | 3.16e-01 | 75.8% | 63.9% |
| 3517183 | 5086.1.1.172 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › UCH_C | 0.52 | 38.0 | 3.39e-01 | 80.2% | 53.3% |