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NC_053508.1__YP_010013083.1__J4T97_gp116__00114
Bact-VirNC_053508.1__YP_010013083.1__J4T97_gp116__00114
Identity
- Accession:
- NC_053508 ↗
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vilmaviridae›
Faithunavirus›
Mycobacterium_phage_GuuelaD
TaxID: 2015819
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-38
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ewlA00 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.72 | 59.0 | 5.21e-01 | 92.1% | 91.1% |
| 1wevA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.68 | 53.0 | 4.62e-01 | 92.1% | 73.4% |
| 4qf3A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.68 | 52.0 | 4.67e-01 | 86.8% | 73.7% |
| 4n4fA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 46.0 | 4.63e-01 | 84.2% | 100.0% |
| 5sviB00 | 3.30.40.100 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.62 | 45.0 | 4.17e-01 | 81.6% | 79.2% |
| 3vhtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.61 | 45.0 | 4.68e-01 | 86.8% | 88.2% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 40.0 | 2.80e-01 | 84.2% | 23.8% |
| 2dlqA03 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 37.0 | 3.85e-01 | 86.8% | 100.0% |
| 3u31A02 | 3.30.1600.10 | Alpha Beta › 2-Layer Sandwich › SIR2/SIRT2 'Small Domain' › SIR2/SIRT2 'Small Domain' | 0.53 | 38.0 | 2.91e-01 | 78.9% | 38.4% |
| 1hnrA00 | 4.10.430.10 | Few Secondary Structures › Irregular › H-NS DNA Binding Protein › Histone-like protein H-NS, C-terminal domain | 0.53 | 36.0 | 3.50e-01 | 71.1% | 59.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3202049 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 63.0 | 6.55e-01 | 89.5% | 97.1% |
| 4031664 | 375.1.1.75 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2197 | 0.76 | 54.0 | 5.33e-01 | 76.3% | 100.0% |
| 5050300 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 56.0 | 5.80e-01 | 81.6% | 100.0% |
| 3717167 | 376.1.5.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger | 0.75 | 57.0 | 5.63e-01 | 84.2% | 80.0% |
| 4950130 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.75 | 54.0 | 5.58e-01 | 84.2% | 85.7% |
| 3889954 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.73 | 60.0 | 5.53e-01 | 97.4% | 72.0% |
| 3788090 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 58.0 | 3.75e-01 | 92.1% | 95.6% |
| 3393209 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.70 | 56.0 | 5.35e-01 | 94.7% | 77.8% |
| 3319781 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.69 | 53.0 | 4.53e-01 | 86.8% | 73.8% |
| 3722725 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.69 | 55.0 | 4.63e-01 | 92.1% | 55.9% |
| 5018523 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 51.0 | 4.23e-01 | 84.2% | 45.7% |
| 4072720 | 375.6.1.1 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › FlhC | 0.68 | 55.0 | 5.65e-01 | 92.1% | 97.1% |
| 3395302 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.68 | 47.0 | 4.38e-01 | 73.7% | 74.0% |
| 5019441 | 361.1.1.0 ↗ | few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain | 0.64 | 52.0 | 4.68e-01 | 92.1% | 72.7% |
| 2488070 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.63 | 49.0 | 4.41e-01 | 94.7% | 76.7% |
| 3888986 | 376.1.1.95 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RH_dom | 0.60 | 43.0 | 4.14e-01 | 86.8% | 86.0% |
| 3972613 | 375.4.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like | 0.59 | 42.0 | 4.17e-01 | 86.8% | 72.5% |
| 3528394 | 220.1.1.185 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › RH_dom | 0.58 | 42.0 | 3.99e-01 | 84.2% | 84.0% |
| 5013364 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 44.0 | 4.20e-01 | 78.9% | 71.1% |
| 3246855 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 44.0 | 3.46e-01 | 94.7% | 41.1% |
| 3193128 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.50 | 35.0 | 2.44e-01 | 71.1% | 21.3% |