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NC_053509.1__YP_010013176.1__J4T98_gp078__00078

Bact-Vir

NC_053509.1__YP_010013176.1__J4T98_gp078__00078

Identity

Accession:
NC_053509 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Faithunavirus› Mycobacterium_phage_Tourach

TaxID: 2599882

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-73
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.66 52.0 3.51e-01 85.7% 70.1%
5kvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 46.0 3.50e-01 77.1% 80.9%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.61 52.0 3.00e-01 94.3% 53.5%
2fe0A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 43.0 3.73e-01 78.6% 85.0%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.58 49.0 3.50e-01 98.6% 61.5%
3q6kA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 44.0 2.85e-01 90.0% 62.1%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.89e-01 91.4% 70.0%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 47.0 3.17e-01 100.0% 57.9%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 44.0 3.48e-01 90.0% 76.4%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 38.0 2.49e-01 75.7% 39.3%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 44.0 2.94e-01 97.1% 47.7%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 42.0 2.77e-01 94.3% 66.6%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.77e-01 94.3% 43.9%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588455 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 42.0 4.22e-01 72.9% 64.3%
3222419 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.65 45.0 4.48e-01 87.1% 68.0%
2630838 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.64 55.0 3.85e-01 94.3% 66.7%
3476961 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.61 52.0 3.68e-01 91.4% 97.4%
3816749 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 49.0 3.19e-01 90.0% 46.9%
3404467 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.60 50.0 3.69e-01 90.0% 99.4%
3343802 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.58 50.0 3.21e-01 100.0% 50.7%
None — 0.57 48.0 3.46e-01 88.6% 79.4%
3405890 5.1.3.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.57 46.0 3.05e-01 91.4% 54.2%
3647885 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.56 43.0 2.85e-01 85.7% 56.2%
3882794 5.1.3.115 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_ATRN-LZTR1 0.55 43.0 2.93e-01 92.9% 46.6%
3928729 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 43.0 3.21e-01 92.9% 64.6%
3904863 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 43.0 2.92e-01 92.9% 44.7%
3190113 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.90e-01 90.0% 58.0%
3869017 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.78e-01 91.4% 42.1%
3738404 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.54 44.0 3.31e-01 91.4% 98.9%
3536311 5.1.3.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.53 42.0 2.92e-01 88.6% 54.9%
3612671 5.1.11.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.53 44.0 2.74e-01 91.4% 52.7%
3778866 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.53 42.0 2.81e-01 92.9% 42.4%
3523247 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.52 41.0 2.86e-01 92.9% 47.5%
3537353 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.52 40.0 2.70e-01 88.6% 45.0%
4938677 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 2.98e-01 100.0% 46.0%
3613906 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 36.0 2.37e-01 75.7% 38.9%
3248667 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.52 44.0 3.24e-01 94.3% 36.3%
5066047 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.52 40.0 2.94e-01 84.3% 49.5%
5038973 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 44.0 2.83e-01 100.0% 34.0%
3889109 5.1.3.135 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.50 38.0 2.62e-01 88.6% 43.4%
3436392 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.50 36.0 2.32e-01 75.7% 45.5%