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NC_053509.1__YP_010013201.1__J4T98_gp103__00103

Bact-Vir

NC_053509.1__YP_010013201.1__J4T98_gp103__00103

Identity

Accession:
NC_053509 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Faithunavirus› Mycobacterium_phage_Tourach

TaxID: 2599882

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-71
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5uh5D02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.68 49.0 3.63e-01 100.0% 29.0%
1rsgA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 57.0 3.65e-01 100.0% 97.1%
3i24B00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.63 48.0 3.53e-01 82.7% 96.4%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.62 44.0 3.79e-01 90.4% 47.6%
5g5gC03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.61 34.0 2.85e-01 75.0% 30.1%
2vx3C02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 49.0 3.21e-01 96.2% 59.8%
6kghA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 40.0 2.77e-01 75.0% 74.7%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.57 48.0 3.22e-01 92.3% 33.0%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.55 48.0 3.98e-01 100.0% 53.6%
2x4lA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 39.0 2.90e-01 76.9% 84.2%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 37.0 3.35e-01 73.1% 57.1%
1u7kA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 46.0 3.35e-01 94.2% 100.0%
1inpA01 4.10.460.10 Few Secondary Structures › Irregular › Inositol Polyphosphate 1-phosphatase; domain 1 › Inositol Polyphosphate 1-phosphatase, domain 1 0.51 32.0 3.34e-01 75.0% 70.2%
2ch5B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 41.0 2.91e-01 100.0% 46.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245228 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 46.0 2.78e-01 94.2% 10.8%
5038748 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.63 46.0 3.62e-01 80.8% 37.5%
3503277 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 30.0 2.83e-01 75.0% 33.8%
3620592 6155.1.1.15 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 0.60 50.0 3.78e-01 100.0% 37.1%
4489492 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.59 47.0 3.13e-01 94.2% 72.8%
3627201 375.10.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.56 44.0 3.93e-01 82.7% 100.0%
3602038 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 43.0 2.44e-01 90.4% 24.7%
4558649 3105.1.1.2 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › DUF5130 0.56 43.0 3.22e-01 86.5% 50.7%
4525886 109.4.1.1360 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p 0.56 49.0 2.74e-01 98.1% 27.9%
3603146 2008.1.1.95 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII 0.56 49.0 3.05e-01 100.0% 53.0%
3491287 176.1.1.1 ↗ alpha arrays › Annexin › Annexin › Annexin › Annexin 0.56 40.0 3.70e-01 88.5% 58.6%
3215406 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.55 40.0 2.41e-01 82.7% 37.5%
3928048 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.55 46.0 2.72e-01 96.2% 17.2%
4394681 862.1.1.4 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase 0.55 39.0 2.63e-01 76.9% 66.8%
3945241 2004.1.1.262 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF2813 0.55 44.0 3.20e-01 100.0% 43.3%
3938146 3382.1.1.1 ↗ alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.54 48.0 2.92e-01 100.0% 45.8%
4472559 2005.1.1.30 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › BshC 0.53 43.0 2.65e-01 90.4% 20.0%
3407495 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.52 41.0 3.02e-01 84.6% 40.8%
3684154 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.52 41.0 3.54e-01 84.6% 77.5%
3655226 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.52 41.0 3.04e-01 86.5% 75.6%
3306435 245.3.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Colicin S4 receptor-binding domain › Colicin S4 receptor-binding domain › BRX 0.51 37.0 3.67e-01 80.8% 74.1%
3592571 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 37.0 3.16e-01 78.8% 54.1%