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NC_053510.1__YP_010013275.1__J4T99_gp045__00045
Bact-VirNC_053510.1__YP_010013275.1__J4T99_gp045__00045
Identity
- Accession:
- NC_053510 ↗
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vilmaviridae›
Bromdenvirus›
Mycobacterium_phage_Bromden
TaxID: 2283252
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-134
Domain cluster:
rep: OP751148.1__WAB08813.1__SEA_SUCCESS_26__00026__D10-25_43-124
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tuaA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.62 | 41.0 | 4.08e-01 | 80.2% | 63.8% |
| 4l3uA00 | 1.20.1480.40 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 | 0.57 | 33.0 | 3.15e-01 | 89.1% | 44.7% |
| 5nclA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.57 | 49.0 | 3.86e-01 | 99.0% | 84.5% |
| 4hdtA00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.55 | 48.0 | 3.42e-01 | 100.0% | 57.1% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.55 | 31.0 | 3.90e-01 | 100.0% | 86.8% |
| 8hp8A01 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.54 | 45.0 | 4.04e-01 | 95.0% | 96.1% |
| 3qd2B02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 44.0 | 3.78e-01 | 100.0% | 86.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3288390 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.66 | 34.0 | 3.98e-01 | 98.0% | 69.3% |
| 5007694 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.62 | 54.0 | 5.10e-01 | 100.0% | 80.8% |
| 5025678 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.62 | 54.0 | 5.00e-01 | 100.0% | 75.4% |
| 5029133 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.60 | 53.0 | 5.02e-01 | 100.0% | 81.7% |
| 5056690 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.60 | 52.0 | 4.84e-01 | 100.0% | 77.6% |
| 5070938 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.59 | 50.0 | 4.67e-01 | 100.0% | 74.6% |
| 4351255 | 191.1.1.91 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › PF29842 | 0.55 | 41.0 | 4.31e-01 | 99.0% | 85.6% |
| 3033455 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.54 | 45.0 | 3.98e-01 | 95.0% | 91.3% |
| 5068222 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.54 | 46.0 | 4.31e-01 | 100.0% | 77.0% |
| 5020941 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.53 | 45.0 | 4.27e-01 | 100.0% | 80.0% |
| 4258748 | 604.39.1.5 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt | 0.53 | 43.0 | 3.71e-01 | 89.1% | 77.6% |
| 3670329 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.52 | 45.0 | 4.35e-01 | 100.0% | 84.3% |
| 4033812 | 3355.1.1.8 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Na_H_antiporter | 0.52 | 45.0 | 3.02e-01 | 100.0% | 97.8% |
| 3586960 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.51 | 34.0 | 3.57e-01 | 100.0% | 73.7% |