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NC_053513.1__YP_010013666.1__J4U02_gp061__00061

Bact-Vir

NC_053513.1__YP_010013666.1__J4U02_gp061__00061

Identity

Accession:
NC_053513 ↗
Kingdom:
phage

Quality

69.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Reyvirus› Mycobacterium_phage_Aziz

TaxID: 2762281

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-50
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 60.0 4.70e-01 100.0% 44.0%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.71 51.0 3.01e-01 78.3% 13.9%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.70 48.0 3.66e-01 71.7% 79.6%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 59.0 4.52e-01 100.0% 41.7%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.69 57.0 4.26e-01 100.0% 51.6%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.67 44.0 4.09e-01 71.7% 51.6%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 56.0 4.44e-01 100.0% 46.3%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.66 41.0 3.53e-01 100.0% 40.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 53.0 4.35e-01 93.5% 48.3%
4ydsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 44.0 2.85e-01 71.7% 19.0%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 45.0 4.06e-01 73.9% 59.1%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 46.0 3.61e-01 80.4% 53.6%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.64 51.0 4.66e-01 100.0% 67.6%
6hq7B02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.63 44.0 2.76e-01 73.9% 18.5%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 50.0 4.65e-01 100.0% 77.6%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.63 54.0 3.66e-01 100.0% 55.9%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 44.0 3.91e-01 73.9% 56.7%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.63 50.0 4.52e-01 97.8% 71.8%
4lj3A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.62 43.0 2.72e-01 73.9% 17.6%
3sy8C02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.62 45.0 2.83e-01 78.3% 19.0%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 45.0 3.29e-01 80.4% 87.7%
3vxvA00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.62 48.0 4.49e-01 100.0% 67.7%
2lqoA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 49.0 4.19e-01 100.0% 97.7%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 42.0 3.84e-01 73.9% 52.2%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 42.0 3.83e-01 73.9% 56.2%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 46.0 3.26e-01 97.8% 26.8%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 43.0 3.78e-01 80.4% 50.7%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 42.0 3.87e-01 80.4% 56.1%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 44.0 3.94e-01 87.0% 61.4%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 40.0 4.28e-01 73.9% 87.2%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.58 43.0 4.26e-01 82.6% 97.9%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.73e-01 100.0% 43.4%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.58 40.0 3.80e-01 73.9% 58.9%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.57 43.0 3.93e-01 97.8% 100.0%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 3.77e-01 80.4% 55.2%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 41.0 3.76e-01 80.4% 59.1%
3shqA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 41.0 2.68e-01 78.3% 67.3%
2ch5B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 47.0 3.14e-01 100.0% 64.0%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 45.0 3.40e-01 91.3% 93.8%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 40.0 3.16e-01 84.8% 52.1%
1oe8A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 43.0 3.70e-01 91.3% 98.8%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.53 46.0 2.97e-01 100.0% 44.5%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 41.0 2.95e-01 100.0% 69.1%
7plsA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 35.0 2.93e-01 71.7% 93.5%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 45.0 3.61e-01 97.8% 82.4%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 2.82e-01 76.1% 57.5%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 37.0 2.23e-01 80.4% 17.9%
1q90C00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 37.0 2.95e-01 91.3% 73.8%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 42.0 3.27e-01 93.5% 45.2%
1x31A02 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.51 42.0 2.52e-01 100.0% 17.9%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.60e-01 95.7% 57.0%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.45e-01 80.4% 72.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944829 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.81 67.0 6.84e-01 97.8% 95.6%
3939443 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.74 63.0 4.85e-01 100.0% 43.6%
3434453 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.73 54.0 5.73e-01 93.5% 100.0%
3924545 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.73 59.0 4.51e-01 100.0% 37.5%
3954708 4325.1.1.9 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 0.72 62.0 6.11e-01 100.0% 96.0%
3518078 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.72 60.0 6.08e-01 95.7% 97.8%
3236050 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.70 59.0 4.53e-01 97.8% 47.3%
3561257 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.70 54.0 4.98e-01 100.0% 64.6%
3931076 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.69 58.0 4.40e-01 100.0% 45.8%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 56.0 4.19e-01 100.0% 36.5%
4297945 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.68 58.0 5.54e-01 100.0% 87.3%
3412142 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.67 53.0 4.01e-01 100.0% 35.0%
5064031 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 43.0 2.61e-01 73.9% 9.5%
3622767 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.66 52.0 4.26e-01 93.5% 45.3%
3927236 216.1.1.17 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C 0.65 49.0 3.54e-01 82.6% 54.5%
5017964 220.1.1.322 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF6141 0.65 56.0 4.58e-01 100.0% 62.9%
4950216 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.65 50.0 4.95e-01 93.5% 85.4%
4341865 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.65 54.0 5.22e-01 100.0% 85.5%
3539226 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.64 52.0 3.91e-01 93.5% 74.2%
3838668 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 46.0 3.82e-01 80.4% 54.4%
4119875 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.64 48.0 4.32e-01 82.6% 70.8%
5049640 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 47.0 3.96e-01 80.4% 58.2%
3514959 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.64 44.0 2.93e-01 73.9% 21.0%
3742504 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.64 48.0 3.75e-01 87.0% 77.3%
3891033 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.62 43.0 3.77e-01 73.9% 52.1%
4322616 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.62 52.0 3.41e-01 100.0% 21.7%
1700100 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.62 43.0 3.96e-01 73.9% 60.7%
3859059 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.61 42.0 3.50e-01 73.9% 43.3%
4950483 2002.1.1.52 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 0.61 52.0 3.20e-01 100.0% 78.5%
3224085 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.61 53.0 3.25e-01 100.0% 45.8%
3581945 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.61 46.0 4.30e-01 100.0% 65.0%
4934507 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.61 45.0 2.94e-01 87.0% 88.6%
4004760 64.1.1.5 ↗ beta meanders › WW domain-like › WW domain › WW domain › DUF333 0.60 41.0 4.13e-01 87.0% 75.6%
3898182 2485.1.1.69 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DUF4174 0.60 48.0 3.57e-01 100.0% 87.1%
3894506 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 43.0 3.78e-01 80.4% 52.9%
3890480 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 42.0 3.67e-01 80.4% 52.0%
2546240 5.1.3.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase 0.57 47.0 3.14e-01 100.0% 63.7%
3559703 101.1.8.12 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3504 0.57 47.0 3.38e-01 100.0% 53.2%
4965528 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 49.0 3.15e-01 100.0% 71.6%
3996624 5.1.5.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.57 43.0 2.59e-01 97.8% 10.7%
3422528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 4.31e-01 95.7% 81.7%
4295269 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 47.0 2.85e-01 100.0% 98.0%
3912274 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 41.0 3.68e-01 80.4% 52.9%
5052071 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.56 44.0 3.16e-01 100.0% 37.6%
3880422 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 45.0 3.93e-01 87.0% 88.2%
4654713 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.55 49.0 3.44e-01 100.0% 80.0%
3204055 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 41.0 3.76e-01 89.1% 60.0%
3670347 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.55 45.0 3.95e-01 100.0% 59.5%
3202023 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.55 37.0 2.76e-01 71.7% 73.3%
4424678 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 47.0 4.20e-01 100.0% 69.2%
3887159 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 46.0 4.08e-01 100.0% 67.7%
3175420 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.54 38.0 2.79e-01 78.3% 67.4%
3327182 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.53 42.0 3.52e-01 91.3% 78.8%
3952995 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.53 45.0 3.72e-01 100.0% 52.9%
4080950 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 40.0 2.66e-01 84.8% 83.7%
3911547 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.52 46.0 3.73e-01 100.0% 56.5%
3284762 4090.1.1.0 ↗ a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.51 44.0 3.14e-01 97.8% 32.4%