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NC_053514.1__YP_010013806.1__J4U03_gp051__00051
Bact-VirNC_053514.1__YP_010013806.1__J4U03_gp051__00051
Identity
- Accession:
- NC_053514 ↗
- Kingdom:
- phage
Quality
75.1
mean pLDDT
Taxonomy
TaxID: 2759459
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-63
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xrpC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 53.0 | 3.65e-01 | 97.9% | 45.1% |
| 3moiA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 43.0 | 2.99e-01 | 100.0% | 20.9% |
| 4mt4A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.57 | 43.0 | 2.46e-01 | 83.0% | 43.6% |
| 3ogzA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 44.0 | 2.65e-01 | 100.0% | 82.2% |
| 3ewkA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 45.0 | 3.57e-01 | 95.7% | 68.2% |
| 3ks7A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 45.0 | 3.11e-01 | 100.0% | 84.4% |
| 5xyiU00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 44.0 | 3.63e-01 | 100.0% | 58.8% |
| 4rx6D00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 43.0 | 3.46e-01 | 100.0% | 43.0% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 42.0 | 3.48e-01 | 97.9% | 53.5% |
| 3rgfA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 45.0 | 2.93e-01 | 100.0% | 33.8% |
| 3gdoA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 41.0 | 2.88e-01 | 100.0% | 42.7% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 38.0 | 3.16e-01 | 100.0% | 41.4% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 42.0 | 2.83e-01 | 91.5% | 45.7% |
| 1dzlA00 | 2.60.175.20 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus | 0.51 | 39.0 | 2.39e-01 | 100.0% | 54.3% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.51 | 38.0 | 3.00e-01 | 83.0% | 90.4% |
| 7oocE01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.51 | 38.0 | 3.33e-01 | 100.0% | 50.6% |
| 2xssA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 44.0 | 3.06e-01 | 100.0% | 41.0% |
| 2j4xA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 42.0 | 3.19e-01 | 100.0% | 50.0% |
| 2d7vB00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.50 | 37.0 | 2.82e-01 | 93.6% | 30.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5020776 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.64 | 49.0 | 2.75e-01 | 87.2% | 47.5% |
| 4969869 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.58 | 45.0 | 3.19e-01 | 100.0% | 24.6% |
| 3732819 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.58 | 46.0 | 2.80e-01 | 100.0% | 92.8% |
| 4928686 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 45.0 | 3.69e-01 | 100.0% | 45.6% |
| 3954143 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.57 | 41.0 | 2.78e-01 | 76.6% | 32.6% |
| 5038748 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.54 | 42.0 | 3.22e-01 | 93.6% | 34.2% |
| 4971267 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.54 | 42.0 | 3.30e-01 | 100.0% | 37.7% |
| 3435653 | 4020.1.1.0 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes | 0.54 | 43.0 | 3.76e-01 | 100.0% | 67.1% |
| 5058661 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.54 | 42.0 | 3.15e-01 | 100.0% | 33.1% |
| 3016810 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.53 | 40.0 | 2.76e-01 | 83.0% | 89.3% |
| 9237 | 2003.1.2.99 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 | 0.52 | 40.0 | 2.78e-01 | 85.1% | 92.6% |
| 3924269 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 42.0 | 2.70e-01 | 93.6% | 37.6% |
| 5041672 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.52 | 42.0 | 3.43e-01 | 100.0% | 60.2% |
| 3306759 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.52 | 42.0 | 2.88e-01 | 100.0% | 26.7% |
| 3955256 | 323.1.1.15 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_C | 0.51 | 43.0 | 2.79e-01 | 97.9% | 44.2% |
| 3936762 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 41.0 | 2.65e-01 | 91.5% | 40.8% |
| 3350168 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.51 | 43.0 | 3.19e-01 | 100.0% | 36.7% |
| 2528752 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.51 | 41.0 | 3.43e-01 | 100.0% | 53.6% |
| 3624306 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.51 | 41.0 | 3.18e-01 | 100.0% | 81.6% |
| 3404546 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.50 | 39.0 | 2.85e-01 | 91.5% | 75.3% |
| 4313221 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.50 | 37.0 | 2.23e-01 | 93.6% | 75.4% |