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NC_053514.1__YP_010013886.1__J4U03_gp123__00131

Bact-Vir

NC_053514.1__YP_010013886.1__J4U03_gp123__00131

Identity

Accession:
NC_053514 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Reyvirus› Mycobacterium_phage_Estes

TaxID: 2759459

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-99
PDB
Domain cluster: rep: NC_054714.1__YP_010056904.1__KHO57_gp129__00200__D15-90
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23904.2 best DUF7246 72.7 4.40e-20 97.7% 75.2%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 67.0 5.47e-01 100.0% 74.7%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 64.0 5.31e-01 95.3% 81.4%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.70 48.0 5.48e-01 70.6% 98.4%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 5.40e-01 78.8% 96.8%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 5.21e-01 95.3% 90.2%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.51e-01 78.8% 94.4%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 59.0 4.90e-01 94.1% 60.3%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.26e-01 77.6% 98.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.24e-01 74.1% 95.5%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.67 49.0 4.66e-01 75.3% 71.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.23e-01 77.6% 98.4%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 5.46e-01 80.0% 98.6%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 46.0 5.05e-01 71.8% 100.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 4.65e-01 88.2% 81.1%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.66 49.0 4.58e-01 81.2% 64.4%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.91e-01 80.0% 92.3%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 3.88e-01 70.6% 99.2%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 45.0 4.78e-01 72.9% 91.9%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.64 38.0 4.54e-01 72.9% 91.1%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 52.0 5.36e-01 87.1% 100.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.87e-01 77.6% 92.8%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 47.0 3.09e-01 78.8% 49.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.67e-01 80.0% 79.5%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.62 47.0 3.82e-01 81.2% 76.1%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.92e-01 92.9% 84.9%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 46.0 4.44e-01 78.8% 83.2%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 42.0 3.51e-01 71.8% 92.0%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 3.73e-01 78.8% 46.4%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 40.0 3.42e-01 70.6% 43.7%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.22e-01 82.4% 74.0%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 43.0 2.87e-01 78.8% 85.3%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.56 40.0 3.51e-01 76.5% 85.3%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 4.21e-01 77.6% 92.4%
3lmlA01 3.10.450.690 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.57e-01 75.3% 54.5%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 34.0 4.00e-01 74.1% 100.0%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 42.0 3.90e-01 82.4% 83.5%
1yguA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 38.0 2.69e-01 71.8% 34.8%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 38.0 3.19e-01 71.8% 84.9%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.53 37.0 3.34e-01 72.9% 70.4%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 37.0 2.61e-01 72.9% 31.5%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 40.0 3.52e-01 83.5% 78.2%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.52 39.0 3.19e-01 80.0% 85.4%
1jcfA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 36.0 3.74e-01 74.1% 94.7%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.70e-01 95.3% 97.2%
1x23B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 41.0 3.44e-01 89.4% 91.4%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 55.0 6.00e-01 76.5% 98.6%
3913782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 51.0 5.81e-01 71.8% 100.0%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 53.0 5.92e-01 75.3% 100.0%
3253266 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 54.0 5.05e-01 78.8% 71.4%
3570369 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 55.0 5.39e-01 84.7% 76.7%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 50.0 5.51e-01 81.2% 95.4%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 51.0 5.76e-01 75.3% 100.0%
4041586 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 50.0 5.60e-01 80.0% 98.5%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 49.0 5.42e-01 76.5% 93.8%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 50.0 5.49e-01 78.8% 96.9%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 51.0 5.63e-01 76.5% 100.0%
3728855 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.51e-01 78.8% 94.7%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 49.0 5.49e-01 82.4% 96.9%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.55e-01 81.2% 98.5%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 49.0 5.46e-01 82.4% 98.5%
3589730 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.69 49.0 5.08e-01 74.1% 92.5%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 48.0 5.27e-01 76.5% 93.8%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 48.0 5.35e-01 80.0% 96.9%
3645842 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.69 54.0 5.62e-01 91.8% 90.0%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 49.0 5.38e-01 82.4% 98.5%
3730835 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.68 49.0 4.75e-01 80.0% 67.4%
3256053 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.68 50.0 4.96e-01 78.8% 73.3%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 49.0 5.35e-01 82.4% 98.5%
3950208 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 48.0 5.38e-01 81.2% 96.9%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 47.0 5.24e-01 77.6% 95.4%
4101580 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 49.0 5.37e-01 78.8% 100.0%
4646632 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.68 48.0 5.33e-01 82.4% 98.5%
4446791 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 47.0 5.18e-01 83.5% 95.4%
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 48.0 5.27e-01 77.6% 96.9%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 48.0 5.24e-01 74.1% 95.5%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 48.0 5.31e-01 82.4% 98.5%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 48.0 5.30e-01 80.0% 98.5%
3590827 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 48.0 5.29e-01 81.2% 98.5%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 46.0 5.15e-01 76.5% 93.8%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 47.0 5.17e-01 77.6% 95.4%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 47.0 5.16e-01 77.6% 95.4%
4086925 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 46.0 5.10e-01 77.6% 93.8%
4213539 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 46.0 5.09e-01 76.5% 93.8%
3496126 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.67 51.0 5.09e-01 81.2% 98.9%
4936914 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 50.0 4.63e-01 78.8% 67.6%
4524363 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 47.0 5.22e-01 80.0% 98.5%
3505947 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.66 52.0 4.63e-01 83.5% 95.0%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 48.0 5.31e-01 80.0% 100.0%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.66 50.0 4.83e-01 80.0% 72.6%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.66 48.0 5.13e-01 80.0% 92.9%
3927214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 4.32e-01 78.8% 55.0%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 46.0 5.04e-01 77.6% 95.4%
2138090 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 46.0 5.01e-01 77.6% 95.4%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.08e-01 87.1% 77.9%
3483489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.86e-01 78.8% 84.0%
4942589 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.65 47.0 5.09e-01 76.5% 92.9%
3862470 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.81e-01 90.6% 75.8%
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 47.0 4.47e-01 80.0% 65.0%
4110324 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.64 50.0 5.15e-01 82.4% 97.5%
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.64 46.0 4.90e-01 81.2% 91.4%
4380562 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.64 55.0 4.16e-01 94.1% 81.5%
4646762 3480.1.1.1 ↗ a+b duplicates or obligate multimers › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein_17 0.63 43.0 4.34e-01 70.6% 76.5%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.63 48.0 5.01e-01 82.4% 93.3%
3749631 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.63 39.0 3.65e-01 78.8% 50.5%
3576152 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.62 43.0 2.96e-01 72.9% 25.9%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.62 35.0 3.50e-01 77.6% 52.9%
3948020 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.62 42.0 3.89e-01 70.6% 63.6%
3059317 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.61 45.0 4.12e-01 78.8% 100.0%
3486847 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.58 49.0 4.60e-01 94.1% 81.9%
4945816 375.1.1.333 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › jr-ZPR1 0.55 34.0 3.90e-01 74.1% 92.7%
3572649 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.55 41.0 4.23e-01 80.0% 100.0%
3891228 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.52 46.0 3.63e-01 98.8% 81.1%
3496242 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 31.0 3.62e-01 74.1% 98.0%
3266046 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.50 33.0 3.77e-01 76.5% 95.0%
3400787 5.1.4.408 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C 0.50 42.0 2.66e-01 96.5% 34.4%