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NC_054393.1__YP_010049706.1__KCH40_gp037__00037

Bact-Vir

NC_054393.1__YP_010049706.1__KCH40_gp037__00037

Identity

Accession:
NC_054393 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-75
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.93 67.0 6.72e-01 75.9% 76.4%
2p6rA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.85 66.0 4.27e-01 87.0% 20.6%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 57.0 5.91e-01 70.4% 74.5%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 57.0 6.18e-01 75.9% 84.4%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 59.0 5.48e-01 74.1% 60.6%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 57.0 5.68e-01 79.6% 71.4%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.81 60.0 4.74e-01 81.5% 39.4%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 63.0 5.87e-01 94.4% 69.7%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 57.0 5.73e-01 75.9% 75.9%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.79 72.0 5.46e-01 100.0% 98.3%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 61.0 6.15e-01 83.3% 98.1%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.76 56.0 4.50e-01 77.8% 44.6%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 50.0 5.36e-01 70.4% 90.9%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.75 59.0 4.92e-01 87.0% 49.0%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.74 54.0 5.34e-01 77.8% 75.0%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 4.97e-01 74.1% 70.4%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.72 60.0 4.62e-01 94.4% 42.1%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.72 51.0 3.53e-01 75.9% 30.2%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 48.0 5.02e-01 74.1% 76.0%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 50.0 4.71e-01 75.9% 68.7%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.70 56.0 3.33e-01 88.9% 56.1%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 52.0 4.70e-01 87.0% 69.2%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 49.0 3.37e-01 79.6% 53.4%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.67 58.0 4.20e-01 100.0% 60.0%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 51.0 4.84e-01 87.0% 69.2%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.59e-01 74.1% 80.7%
2lvsA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 47.0 4.85e-01 75.9% 83.7%
1ojlA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 46.0 4.88e-01 74.1% 85.1%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.66 44.0 4.66e-01 70.4% 84.8%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.66 46.0 4.09e-01 74.1% 57.9%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 57.0 4.33e-01 100.0% 48.8%
7vjmB01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 44.0 4.19e-01 72.2% 64.1%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 46.0 4.15e-01 85.2% 55.3%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.64 47.0 3.49e-01 79.6% 36.1%
1umqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 53.0 5.17e-01 100.0% 90.0%
2hyjA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 43.0 4.64e-01 72.2% 97.8%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 53.0 3.60e-01 96.3% 49.3%
2ip2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.14e-01 85.2% 100.0%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 50.0 3.44e-01 96.3% 39.3%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.22e-01 94.4% 94.7%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.03e-01 88.9% 100.0%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 44.0 4.16e-01 85.2% 71.4%
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 45.0 4.20e-01 92.6% 69.3%
3q18A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 45.0 3.75e-01 100.0% 72.4%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.42e-01 87.0% 38.4%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.54 38.0 3.58e-01 74.1% 77.6%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.58e-01 79.6% 94.4%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.53 39.0 3.15e-01 88.9% 93.9%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.67e-01 87.0% 100.0%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.86e-01 96.3% 97.5%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.51e-01 75.9% 82.8%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5024511 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.96 65.0 6.76e-01 70.4% 76.0%
4334657 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.95 65.0 7.10e-01 70.4% 84.4%
4198219 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.95 65.0 7.07e-01 70.4% 84.4%
4008322 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.94 64.0 6.40e-01 70.4% 69.1%
3589359 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.93 63.0 7.25e-01 70.4% 95.0%
5063318 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.93 72.0 7.17e-01 81.5% 80.0%
1159643 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.93 67.0 6.04e-01 75.9% 59.2%
4964802 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.93 70.0 6.73e-01 79.6% 71.7%
4385054 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 65.0 7.39e-01 74.1% 100.0%
3753093 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.92 62.0 5.80e-01 70.4% 58.5%
3587644 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.91 66.0 6.38e-01 75.9% 70.0%
4998605 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.91 64.0 4.96e-01 74.1% 36.4%
5006645 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.91 65.0 6.22e-01 75.9% 66.7%
4165809 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 65.0 5.49e-01 75.9% 49.4%
3988724 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 64.0 6.16e-01 74.1% 66.7%
5038587 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.90 62.0 6.03e-01 72.2% 66.7%
4945039 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.90 62.0 5.99e-01 75.9% 65.0%
4976345 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.89 62.0 5.95e-01 74.1% 65.0%
4943227 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.89 61.0 6.66e-01 75.9% 86.7%
5051680 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.89 78.0 6.77e-01 96.3% 66.3%
3857628 101.1.3.29 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › CENP-B_N 0.89 61.0 5.73e-01 74.1% 60.0%
4927434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 61.0 6.63e-01 74.1% 86.7%
3590885 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 60.0 5.42e-01 70.4% 55.7%
5014141 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.88 62.0 6.46e-01 74.1% 80.0%
5028266 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 60.0 5.87e-01 74.1% 66.1%
3962903 101.1.2.486 alpha arrays › HTH › HTH › winged helix domain › HTH_58 0.87 59.0 6.65e-01 72.2% 95.0%
3544647 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.87 60.0 5.63e-01 74.1% 60.0%
3693312 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 61.0 5.93e-01 74.1% 66.7%
4008959 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 78.0 7.78e-01 98.1% 96.4%
5030780 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.86 62.0 6.40e-01 75.9% 84.0%
5018585 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.86 60.0 5.97e-01 74.1% 70.9%
3789627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 59.0 5.53e-01 74.1% 60.0%
3879118 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.85 58.0 5.85e-01 74.1% 70.9%
3590732 101.1.1.364 alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 0.84 57.0 6.14e-01 74.1% 84.4%
4952807 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.84 74.0 6.60e-01 98.1% 70.7%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.84 59.0 5.73e-01 74.1% 66.7%
3786128 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 59.0 5.12e-01 74.1% 50.0%
3565285 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.83 57.0 5.39e-01 74.1% 60.0%
4973199 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.83 56.0 5.43e-01 70.4% 63.3%
4162857 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.83 57.0 5.92e-01 74.1% 78.0%
4997092 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.83 56.0 5.09e-01 70.4% 54.3%
4974140 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.83 69.0 5.60e-01 94.4% 50.0%
4238039 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.82 56.0 5.40e-01 70.4% 63.3%
3404418 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.82 55.0 5.08e-01 70.4% 55.7%
5077769 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.82 61.0 6.29e-01 79.6% 86.0%
3283589 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.82 58.0 5.98e-01 75.9% 80.0%
5050152 101.1.3.35 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Terminase_5 0.82 59.0 6.13e-01 81.5% 82.0%
1035813 101.1.6.2 alpha arrays › HTH › HTH › TrpR › HTH_7 0.82 57.0 5.83e-01 79.6% 76.9%
3376425 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.81 58.0 4.96e-01 75.9% 49.4%
3783362 2004.1.1.455 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.81 55.0 3.05e-01 70.4% 6.0%
3904156 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 55.0 5.96e-01 74.1% 86.7%
3971636 101.28.1.0 alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins 0.80 54.0 6.01e-01 70.4% 97.5%
4054648 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 66.0 6.57e-01 92.6% 90.9%
4970998 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.80 60.0 4.90e-01 81.5% 44.0%
4143289 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.79 53.0 5.36e-01 70.4% 69.1%
3243649 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.79 58.0 4.84e-01 77.8% 68.9%
5013438 101.1.2.881 alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.79 59.0 5.74e-01 81.5% 75.0%
3932988 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 55.0 5.51e-01 74.1% 72.7%
139963 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 61.0 6.15e-01 83.3% 98.1%
3278040 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 55.0 5.40e-01 75.9% 68.3%
5021231 101.1.1.544 alpha arrays › HTH › HTH › Three-helical HTH › DUF1670 0.78 58.0 5.04e-01 81.5% 51.8%
3410877 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 54.0 4.95e-01 74.1% 57.1%
4133453 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 51.0 5.14e-01 74.1% 80.0%
3953111 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.72 54.0 4.99e-01 87.0% 62.9%
4010017 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.71 56.0 5.15e-01 87.0% 65.7%
3286796 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.71 47.0 3.87e-01 74.1% 38.9%
3955106 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.71 49.0 4.12e-01 74.1% 43.3%
3933366 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.71 52.0 4.80e-01 81.5% 61.4%
3963336 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.68 60.0 4.01e-01 98.1% 40.5%
3985633 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.67 47.0 4.77e-01 75.9% 74.5%
3964524 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.59 52.0 3.59e-01 96.3% 49.1%