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NC_054421.1__YP_010050009.1__KDI99_gp27__00027

Bact-Vir

NC_054421.1__YP_010050009.1__KDI99_gp27__00027

Identity

Accession:
NC_054421 ↗
Kingdom:
phage

Quality

54.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Korravirus› Arthrobacter_phage_Greenhouse

TaxID: 1897428

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 67-134
PDB
Domain cluster: rep: NC_048139.1__YP_009818468.1__HOU95_gp032__00032__D10-73
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6f8hC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 61.0 5.45e-01 76.5% 59.1%
3cecA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.83 61.0 5.45e-01 76.5% 63.7%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.82 60.0 5.66e-01 76.5% 73.4%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 52.0 5.33e-01 88.2% 77.3%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 48.0 4.61e-01 82.4% 66.2%
1vpwA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 40.0 4.30e-01 97.1% 73.7%
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 38.0 4.32e-01 97.1% 78.8%
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.61 39.0 4.49e-01 100.0% 95.7%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 45.0 4.02e-01 77.9% 61.2%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.59 34.0 3.16e-01 95.6% 43.8%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.59 45.0 4.17e-01 85.3% 91.0%
3cz1A00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.57 46.0 3.94e-01 92.6% 90.6%
1ugoA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.56 31.0 2.76e-01 97.1% 36.4%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 36.0 3.11e-01 98.5% 43.4%
5mq1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 37.0 3.29e-01 73.5% 68.5%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.53 34.0 3.27e-01 80.9% 54.3%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.53 38.0 3.27e-01 76.5% 88.2%
1bxiA00 1.10.1200.20 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Colicin E immunity protein 0.52 43.0 4.08e-01 92.6% 88.0%
2qwoB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.52 41.0 3.83e-01 92.6% 68.5%
1ym3A00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.52 45.0 3.31e-01 100.0% 62.2%
4m7cB00 1.25.40.210 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain 0.50 39.0 2.98e-01 92.6% 85.9%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053876 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 52.0 5.45e-01 70.6% 78.3%
3441997 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.61 42.0 3.86e-01 77.9% 54.4%
3943441 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.59 40.0 4.60e-01 89.7% 98.0%
3548411 6170.1.1.1 ↗ alpha bundles › Kv7 proximal C-terminal Domain › Kv7 proximal C-terminal Domain › Kv7 proximal C-terminal Domain › KCNQ_channel 0.58 38.0 3.66e-01 97.1% 60.0%
3248411 2004.1.1.15 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU,EFTUD2 0.55 46.0 2.92e-01 97.1% 27.1%
3231513 109.4.1.129 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Leuk-A4-hydro_C 0.54 38.0 3.01e-01 73.5% 73.3%
3374812 150.1.1.124 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › THU_Piezo1 0.52 40.0 3.30e-01 85.3% 46.9%
3610209 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.51 35.0 3.62e-01 97.1% 73.8%
4017176 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 37.0 2.82e-01 76.5% 78.7%