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NC_054437.1__YP_010051023.1__KDJ60_gp07__00007

Bact-Vir

NC_054437.1__YP_010051023.1__KDJ60_gp07__00007

Identity

Accession:
NC_054437 ↗
Kingdom:
phage

Quality

72.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tinalinvirus› Gordonia_phage_TinaLin

TaxID: 2797324

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-47
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1totA00 3.30.60.90 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Zinc finger, ZZ-type 0.79 60.0 5.48e-01 84.6% 67.3%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.76 55.0 3.36e-01 97.4% 12.7%
5dkaA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.74 55.0 4.17e-01 82.1% 51.0%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.74 57.0 4.57e-01 92.3% 45.5%
6xi7B02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.70 57.0 5.78e-01 97.4% 100.0%
7zj3D01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 42.0 3.56e-01 79.5% 46.9%
1r3fA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.58 43.0 3.62e-01 82.1% 47.7%
1n0uA03 3.90.1430.10 Alpha Beta › Alpha-Beta Complex › Yeast translation eEF2 (G' domain) › Yeast translation eEF2 (G' domain) 0.56 35.0 2.63e-01 84.6% 20.6%
1kk1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 36.0 2.32e-01 76.9% 11.2%
1sqhA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 42.0 3.18e-01 100.0% 55.7%
6melB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 40.0 2.76e-01 82.1% 70.3%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 2.51e-01 74.4% 15.3%
3r2qA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 40.0 3.39e-01 97.4% 78.7%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994045 377.1.1.134 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7573 0.88 68.0 7.19e-01 87.2% 97.1%
5037811 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.87 69.0 7.17e-01 89.7% 97.1%
4932324 375.1.5.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C 0.87 62.0 6.77e-01 79.5% 100.0%
4929975 375.1.5.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein Ta0289-C 0.86 62.0 6.69e-01 79.5% 100.0%
3243705 377.1.1.4 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA 0.85 75.0 6.96e-01 100.0% 82.0%
3881612 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.85 64.0 5.53e-01 82.1% 53.3%
4967659 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.84 60.0 3.90e-01 79.5% 18.2%
3383207 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.84 66.0 5.17e-01 87.2% 43.8%
3928404 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.83 63.0 6.32e-01 87.2% 82.5%
3806562 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.82 62.0 5.94e-01 82.1% 71.1%
4076809 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.81 59.0 6.23e-01 79.5% 91.4%
3662931 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.80 60.0 5.58e-01 82.1% 64.0%
3354160 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.80 66.0 4.54e-01 92.3% 44.6%
3715593 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 64.0 6.41e-01 89.7% 90.0%
3716359 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 64.0 5.58e-01 89.7% 60.0%
3240391 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.80 58.0 6.03e-01 79.5% 94.3%
3664680 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.80 61.0 4.56e-01 84.6% 34.7%
3890373 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.78 58.0 5.40e-01 82.1% 64.0%
4029669 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.78 58.0 5.20e-01 82.1% 58.2%
3226790 376.1.1.35 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_14 0.78 63.0 4.74e-01 92.3% 41.1%
4187705 377.1.3.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › zf-FPG_IleRS 0.76 58.0 5.47e-01 84.6% 67.3%
3953196 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.76 60.0 4.53e-01 89.7% 38.9%
3229366 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.76 56.0 5.04e-01 82.1% 58.2%
3537276 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 54.0 4.14e-01 79.5% 32.6%
3487516 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.74 60.0 4.62e-01 100.0% 73.0%
3491043 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.74 57.0 4.32e-01 92.3% 37.1%
3618459 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.72 53.0 4.82e-01 82.1% 58.2%
3831637 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.72 61.0 5.18e-01 97.4% 76.9%
3899147 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.71 58.0 4.82e-01 92.3% 61.4%
3721362 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.71 51.0 4.61e-01 82.1% 53.3%
3472836 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.71 56.0 4.88e-01 100.0% 57.1%
2069062 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.71 51.0 4.67e-01 82.1% 57.1%
3807783 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.70 57.0 5.73e-01 94.9% 100.0%
3802006 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.70 58.0 5.15e-01 97.4% 85.0%
160874 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.70 55.0 4.72e-01 94.9% 76.1%
3799223 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 55.0 4.77e-01 100.0% 70.0%
3432956 376.1.1.93 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SIP5_N 0.69 55.0 4.45e-01 94.9% 57.8%
3670046 376.1.1.93 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SIP5_N 0.69 55.0 4.41e-01 94.9% 56.5%
3232866 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.68 54.0 4.80e-01 100.0% 69.2%
3401259 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.68 54.0 4.81e-01 100.0% 72.3%
3625637 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.68 56.0 5.31e-01 100.0% 86.0%
3748776 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.68 49.0 4.04e-01 82.1% 40.0%
3833930 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.68 55.0 5.07e-01 100.0% 87.3%
3485196 7056.1.1.3 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.68 61.0 5.17e-01 97.4% 95.0%
3794548 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.68 54.0 4.10e-01 100.0% 43.6%
3808933 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.68 53.0 4.64e-01 100.0% 64.3%
3307592 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.68 48.0 4.57e-01 79.5% 74.0%
3691267 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.68 56.0 4.33e-01 94.9% 54.4%
3734069 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.67 56.0 4.26e-01 94.9% 51.6%
3378252 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.67 52.0 4.57e-01 100.0% 64.3%
3817566 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 49.0 4.72e-01 79.5% 82.2%
4937876 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 48.0 3.39e-01 82.1% 24.8%
3996137 376.1.1.97 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_ZNF598 0.66 48.0 4.06e-01 84.6% 45.3%
4937856 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 46.0 4.18e-01 82.1% 55.0%
3796504 376.1.1.97 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_ZNF598 0.65 47.0 3.48e-01 84.6% 26.4%
3170760 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.64 44.0 4.29e-01 79.5% 62.0%
3400916 377.1.1.20 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Vps39_2 0.64 52.0 5.02e-01 97.4% 100.0%
3448612 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 45.0 4.50e-01 76.9% 77.5%
4180840 2007.1.6.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › Shikimate_dh_N 0.63 45.0 3.38e-01 79.5% 41.8%
3289848 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.60 48.0 3.86e-01 92.3% 46.7%
3925077 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.57 49.0 3.67e-01 100.0% 52.0%
5032007 375.1.1.204 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PolC_DP2_central 0.53 33.0 2.49e-01 74.4% 21.9%
3457638 4357.1.1.6 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 0.52 35.0 2.85e-01 87.2% 31.1%
4139105 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.52 40.0 2.68e-01 89.7% 27.1%
D2 high residues 54-121
PDB