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NC_054444.1__YP_010051594.1__KDW74_gp54__00054

Bact-Vir

NC_054444.1__YP_010051594.1__KDW74_gp54__00054

Identity

Accession:
NC_054444 ↗
Kingdom:
phage

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Antsirabevirus› Mycobacterium_phage_Antsirabe

TaxID: 2575610

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 109-186
PDB
Domain cluster: rep: NC_054393.1__YP_010049738.1__KCH40_gp098__00069__D48-104
D2 medium residues 3-64
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lxhC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.79 47.0 4.87e-01 88.7% 63.8%
5d0iB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.76 44.0 4.74e-01 100.0% 68.6%
6xi7B02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.74 40.0 4.86e-01 82.3% 84.6%
5eyaF00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 45.0 4.23e-01 98.4% 51.3%
2gatA00 3.30.50.10 Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A 0.71 44.0 4.38e-01 100.0% 59.1%
2jrjA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 41.0 4.42e-01 100.0% 76.9%
2dzjA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 45.0 4.05e-01 80.6% 88.6%
1epwA01 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.59 51.0 3.11e-01 100.0% 56.8%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 40.0 3.50e-01 71.0% 84.2%
2pw9C02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 42.0 4.37e-01 80.6% 100.0%
2dloA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.57 49.0 4.55e-01 100.0% 75.3%
3id6A01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 40.0 3.42e-01 77.4% 76.4%
2grvC03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.55 42.0 2.87e-01 82.3% 41.1%
5sviB00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.55 38.0 4.01e-01 82.3% 84.9%
2xzm500 3.30.1740.20 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 0.55 44.0 3.73e-01 85.5% 69.4%
3vskA02 1.10.10.1230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain 0.55 39.0 3.02e-01 80.6% 33.6%
1ga6A00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.54 44.0 2.80e-01 96.8% 98.9%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.59e-01 77.4% 76.6%
5b3hC01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 32.0 3.45e-01 90.3% 75.0%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.55e-01 75.8% 76.3%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.17e-01 100.0% 97.8%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.57e-01 80.6% 88.1%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.60e-01 77.4% 84.9%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.61e-01 74.2% 76.1%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.05e-01 80.6% 56.7%
3k85A00 3.30.230.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 40.0 2.65e-01 90.3% 86.3%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.51 36.0 3.29e-01 74.2% 84.5%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 2.83e-01 75.8% 41.3%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.47e-01 75.8% 80.6%
4mtdA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.51 41.0 4.13e-01 90.3% 92.1%
2ewlA00 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 35.0 3.63e-01 82.3% 82.1%
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 35.0 2.59e-01 74.2% 49.1%
3v4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 36.0 2.47e-01 77.4% 41.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3342185 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.79 49.0 4.19e-01 88.7% 41.1%
4940040 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.73 43.0 4.84e-01 87.1% 80.0%
5011496 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 42.0 3.80e-01 83.9% 50.6%
4319297 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.63 41.0 3.96e-01 87.1% 58.6%
3785325 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 53.0 4.76e-01 100.0% 83.3%
3825851 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 49.0 4.71e-01 98.4% 77.1%
3290579 221.10.1.1 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.60 44.0 4.19e-01 80.6% 98.7%
4938470 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.36e-01 91.9% 97.8%
5068408 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.58 33.0 3.80e-01 71.0% 77.8%
5049119 221.10.1.1 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.56 44.0 4.00e-01 87.1% 70.6%
3721277 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 46.0 3.03e-01 100.0% 61.7%
4545531 220.1.1.255 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_10 0.54 35.0 3.27e-01 79.0% 51.2%
5019931 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 2.95e-01 75.8% 54.7%
4976799 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.31e-01 74.2% 64.2%
5071428 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.34e-01 80.6% 72.7%
1701001 2498.1.1.15 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M27 0.53 42.0 2.62e-01 93.5% 57.7%
3322119 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.04e-01 80.6% 91.7%
3837892 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 2.39e-01 75.8% 16.7%
5036096 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.44e-01 87.1% 66.4%
3329724 101.1.2.60 ↗ alpha arrays › HTH › HTH › winged helix domain › HA2_N 0.52 39.0 3.79e-01 83.9% 87.1%
3362615 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.52 37.0 2.82e-01 75.8% 36.7%
4928633 101.1.2.18 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.52 37.0 3.16e-01 77.4% 68.6%
2321115 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 37.0 2.39e-01 75.8% 70.5%
4316044 101.1.2.388 ↗ alpha arrays › HTH › HTH › winged helix domain › YjhX_toxin 0.51 37.0 3.31e-01 77.4% 78.9%
5071274 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.25e-01 77.4% 63.2%
3958546 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 41.0 4.15e-01 91.9% 98.3%
4987454 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.50 36.0 3.27e-01 77.4% 70.0%
5069502 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 35.0 3.14e-01 75.8% 57.9%
4927049 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 36.0 3.16e-01 79.0% 70.0%