←Back to structures
NC_054446.1__YP_010051731.1__KDW76_gp61__00061
Bact-VirNC_054446.1__YP_010051731.1__KDW76_gp61__00061
Identity
- Accession:
- NC_054446 ↗
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Taxonomy
TaxID: 2599868
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-52
Domain cluster:
rep: NC_054443.1__YP_010051534.1__KDW73_gp62__00062__D55-97
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lojA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.67 | 46.0 | 4.90e-01 | 76.1% | 84.6% |
| 6hoxA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 46.0 | 2.92e-01 | 76.1% | 15.9% |
| 3v0aB03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 45.0 | 2.93e-01 | 76.1% | 18.5% |
| 2uurA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 55.0 | 3.55e-01 | 100.0% | 85.2% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.62 | 46.0 | 3.31e-01 | 97.8% | 27.4% |
| 3d89A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.62 | 45.0 | 3.32e-01 | 93.5% | 27.2% |
| 1b69A00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.62 | 42.0 | 3.72e-01 | 71.7% | 50.7% |
| 8k9yA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 44.0 | 2.72e-01 | 100.0% | 11.7% |
| 2mk5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 43.0 | 3.27e-01 | 78.3% | 53.4% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 47.0 | 3.95e-01 | 91.3% | 83.5% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.60 | 48.0 | 4.16e-01 | 91.3% | 56.9% |
| 5j3tA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 48.0 | 3.56e-01 | 93.5% | 51.6% |
| 3f0zA01 | 3.30.310.260 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.60 | 50.0 | 3.90e-01 | 100.0% | 44.6% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 50.0 | 3.44e-01 | 100.0% | 50.9% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.59 | 41.0 | 3.93e-01 | 76.1% | 73.7% |
| 1v5rA00 | 3.30.920.20 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Gas2-like domain | 0.59 | 48.0 | 3.81e-01 | 93.5% | 48.5% |
| 1r77A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 41.0 | 3.34e-01 | 78.3% | 69.7% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 41.0 | 3.90e-01 | 76.1% | 67.3% |
| 1owqA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 40.0 | 3.60e-01 | 76.1% | 51.5% |
| 3vcaA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.56 | 41.0 | 3.11e-01 | 95.7% | 31.1% |
| 3alfA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 39.0 | 3.52e-01 | 76.1% | 52.9% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 46.0 | 3.38e-01 | 100.0% | 37.9% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 48.0 | 3.87e-01 | 100.0% | 56.0% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 38.0 | 3.52e-01 | 76.1% | 62.7% |
| 1o70A02 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.55 | 44.0 | 3.21e-01 | 100.0% | 68.6% |
| 5dezA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.54 | 39.0 | 3.50e-01 | 82.6% | 52.7% |
| 1tolA01 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.54 | 45.0 | 3.80e-01 | 100.0% | 54.9% |
| 3rheA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 46.0 | 3.49e-01 | 100.0% | 93.0% |
| 4qt4A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.53 | 43.0 | 2.97e-01 | 95.7% | 66.7% |
| 4griA02 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.53 | 44.0 | 3.36e-01 | 100.0% | 82.9% |
| 2fgtA02 | 3.10.450.310 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 42.0 | 3.54e-01 | 91.3% | 51.2% |
| 2jvnA00 | 3.90.640.80 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.51 | 34.0 | 2.61e-01 | 71.7% | 44.4% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 2.90e-01 | 91.3% | 42.9% |
| 1cjaA01 | 3.30.1010.10 | Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 | 0.51 | 42.0 | 3.04e-01 | 100.0% | 66.0% |
| 6b1zA02 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.51 | 40.0 | 3.09e-01 | 100.0% | 86.0% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3737151 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.72 | 58.0 | 3.33e-01 | 91.3% | 11.0% |
| 5041234 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.71 | 51.0 | 4.70e-01 | 76.1% | 61.7% |
| 4383382 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.68 | 56.0 | 3.84e-01 | 100.0% | 38.4% |
| 4633731 | 10.1.1.25 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N | 0.68 | 48.0 | 3.06e-01 | 76.1% | 16.8% |
| 2858693 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.67 | 49.0 | 4.84e-01 | 95.7% | 73.5% |
| 2512825 | 10.1.1.25 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N | 0.64 | 46.0 | 2.94e-01 | 76.1% | 16.4% |
| 3483861 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.64 | 55.0 | 4.67e-01 | 100.0% | 67.5% |
| 3788651 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.63 | 47.0 | 3.02e-01 | 84.8% | 30.6% |
| 3214527 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.62 | 45.0 | 3.40e-01 | 80.4% | 74.4% |
| 5000991 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.62 | 48.0 | 3.60e-01 | 91.3% | 33.8% |
| 3884178 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.62 | 47.0 | 4.06e-01 | 84.8% | 53.3% |
| 4323155 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.61 | 53.0 | 4.15e-01 | 100.0% | 66.0% |
| 141372 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.61 | 47.0 | 3.95e-01 | 91.3% | 83.5% |
| 3928114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.61 | 51.0 | 3.00e-01 | 100.0% | 28.2% |
| 3199701 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.61 | 51.0 | 3.11e-01 | 100.0% | 55.5% |
| 4943369 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.60 | 52.0 | 3.30e-01 | 97.8% | 42.1% |
| 3501515 | 391.1.2.9 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 | 0.60 | 40.0 | 3.61e-01 | 93.5% | 47.1% |
| 3383010 | 4.1.1.299 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 | 0.59 | 42.0 | 3.15e-01 | 100.0% | 27.7% |
| 4003164 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.59 | 50.0 | 3.07e-01 | 100.0% | 49.4% |
| 4261505 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.59 | 41.0 | 3.81e-01 | 78.3% | 58.5% |
| 4967615 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 47.0 | 3.20e-01 | 91.3% | 49.7% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.58 | 49.0 | 2.92e-01 | 100.0% | 20.5% |
| 3939093 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.58 | 39.0 | 3.34e-01 | 71.7% | 53.3% |
| 3626364 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.57 | 48.0 | 3.60e-01 | 95.7% | 41.7% |
| 4996608 | 2007.9.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 | 0.57 | 44.0 | 2.95e-01 | 89.1% | 84.5% |
| 4992030 | 632.1.1.40 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DUF3536 | 0.57 | 48.0 | 3.22e-01 | 100.0% | 27.3% |
| 3361094 | 284.2.1.1 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 | 0.56 | 43.0 | 2.67e-01 | 93.5% | 18.3% |
| 4515677 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.56 | 43.0 | 3.42e-01 | 91.3% | 64.0% |
| 415434 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.56 | 39.0 | 3.49e-01 | 76.1% | 52.1% |
| 3391302 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 44.0 | 2.71e-01 | 89.1% | 14.3% |
| 4255854 | 4294.1.1.8 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › PF27112 | 0.56 | 40.0 | 3.97e-01 | 84.8% | 74.0% |
| 5006277 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.55 | 40.0 | 3.94e-01 | 82.6% | 83.7% |
| 3290823 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.55 | 44.0 | 3.93e-01 | 100.0% | 78.7% |
| 3209839 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.54 | 41.0 | 3.37e-01 | 93.5% | 42.0% |
| 4973263 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.54 | 44.0 | 3.54e-01 | 91.3% | 76.7% |
| 3785729 | 59.1.1.5 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Dcc1 | 0.54 | 44.0 | 3.69e-01 | 100.0% | 78.9% |
| 4995617 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.53 | 44.0 | 3.71e-01 | 100.0% | 67.4% |
| 3415621 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.53 | 41.0 | 3.98e-01 | 100.0% | 93.3% |
| 3455391 | 2004.1.1.51 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 | 0.53 | 43.0 | 3.10e-01 | 97.8% | 88.2% |
| 1143749 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.53 | 45.0 | 4.27e-01 | 100.0% | 79.3% |
| 5064269 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.52 | 43.0 | 3.66e-01 | 100.0% | 65.9% |
| 4975578 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.52 | 43.0 | 2.73e-01 | 100.0% | 44.7% |
| 3698130 | 216.1.1.14 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med1 | 0.52 | 42.0 | 3.38e-01 | 97.8% | 45.7% |
| 3918694 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.52 | 39.0 | 3.33e-01 | 91.3% | 52.2% |
| 5042293 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.52 | 43.0 | 3.66e-01 | 100.0% | 69.4% |
| 3668608 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 37.0 | 2.45e-01 | 82.6% | 41.2% |
| 4421680 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 41.0 | 3.63e-01 | 100.0% | 91.3% |
| 4945556 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 39.0 | 2.85e-01 | 100.0% | 90.8% |
| 4026983 | 604.1.1.135 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 | 0.51 | 41.0 | 2.76e-01 | 97.8% | 20.9% |
| 3616581 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.51 | 41.0 | 2.58e-01 | 100.0% | 27.9% |
| 4616207 | 4.1.1.448 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5372 | 0.51 | 38.0 | 3.74e-01 | 93.5% | 78.0% |
| 3702975 | 3556.1.1.0 ↗ | a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 | 0.50 | 41.0 | 3.40e-01 | 100.0% | 74.5% |
| 4071917 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.50 | 37.0 | 3.71e-01 | 95.7% | 76.0% |