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NC_054447.1__YP_010051786.1__KDW77_gp51__00051

Bact-Vir

NC_054447.1__YP_010051786.1__KDW77_gp51__00051

Identity

Accession:
NC_054447 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pinnievirus› Mycobacterium_phage_Pinnie

TaxID: 2517965

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-85
PDB
Domain cluster: rep: MK291444.1__AZV00369.1__pthi1_p04__00004__D9-76
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ndxA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 49.0 3.25e-01 100.0% 47.2%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.57 50.0 3.58e-01 98.6% 40.6%
4e21A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 41.0 3.13e-01 81.7% 31.1%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 38.0 2.97e-01 71.8% 97.7%
4uqfA02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.56 46.0 3.82e-01 94.4% 81.3%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 46.0 3.59e-01 95.8% 42.1%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 45.0 3.51e-01 94.4% 40.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 41.0 3.82e-01 91.5% 64.1%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 39.0 3.54e-01 76.1% 87.6%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.54 42.0 3.22e-01 85.9% 65.1%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 36.0 3.30e-01 71.8% 51.0%
2a74A06 6.20.50.160 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 34.0 3.58e-01 74.6% 71.9%
3e05B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 36.0 2.79e-01 71.8% 91.7%
2i9dA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 41.0 3.00e-01 87.3% 88.7%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 32.0 3.09e-01 74.6% 51.9%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.31e-01 80.3% 52.3%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.39e-01 76.1% 82.0%
3sm4A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.50 43.0 3.11e-01 100.0% 48.0%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.50 26.0 2.82e-01 80.3% 59.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3993633 2492.1.1.42 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB, MitMem_reg 0.59 48.0 3.55e-01 97.2% 48.9%
3889952 263.1.1.0 ↗ a+b three layers › SRF-like › SRF-like › SRF-like 0.59 44.0 4.42e-01 91.5% 84.3%
4183868 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.57 37.0 3.58e-01 77.5% 59.5%
3036424 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.57 43.0 3.67e-01 81.7% 55.0%
5030555 3433.1.1.0 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.57 33.0 4.00e-01 87.3% 100.0%
3769782 263.1.1.4 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › PRAS_NT 0.57 46.0 4.72e-01 98.6% 98.5%
3837772 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 44.0 3.16e-01 91.5% 85.7%
4213219 109.21.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain 0.53 41.0 2.39e-01 87.3% 11.1%
3953062 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.53 41.0 3.15e-01 93.0% 36.9%
3627479 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.52 35.0 2.98e-01 70.4% 86.4%
3576850 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.52 42.0 2.90e-01 98.6% 82.8%
3682758 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 43.0 3.99e-01 91.5% 72.2%
3810819 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 46.0 2.85e-01 100.0% 26.0%
None — 0.52 37.0 3.57e-01 87.3% 64.7%
3420427 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.52 43.0 3.67e-01 100.0% 53.8%
3672275 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 41.0 2.68e-01 93.0% 48.6%
3710894 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 28.0 3.15e-01 78.9% 67.2%
5079575 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 37.0 2.93e-01 80.3% 54.5%
3911484 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.50 36.0 3.42e-01 81.7% 63.5%
3265841 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.50 38.0 3.50e-01 90.1% 61.0%