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NC_054449.1__YP_010051906.1__KD928_gp42__00042

Bact-Vir

NC_054449.1__YP_010051906.1__KD928_gp42__00042

Identity

Accession:
NC_054449 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Charlievirus› Mycobacterium_phage_Philonius

TaxID: 2047843

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-87
PDB
Domain cluster: rep: MW584160.1__QSM02340.1__PROPHIGD86-1_66__00066__D2-68
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23851.2 best DUF7214 147.4 1.50e-43 100.0% 96.7%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.69 56.0 5.75e-01 89.3% 98.8%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.67 49.0 4.34e-01 77.4% 69.4%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.66 43.0 3.83e-01 76.2% 47.5%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.65 47.0 3.91e-01 82.1% 43.8%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.61 43.0 3.54e-01 73.8% 40.9%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 43.0 3.42e-01 83.3% 35.8%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.60 43.0 3.49e-01 75.0% 44.7%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 45.0 4.14e-01 81.0% 71.1%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.60 44.0 3.73e-01 77.4% 78.4%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 41.0 4.35e-01 95.2% 80.3%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.64e-01 70.2% 51.7%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.59 51.0 4.23e-01 97.6% 96.7%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 43.0 3.64e-01 79.8% 73.2%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 39.0 3.46e-01 71.4% 93.5%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 41.0 3.57e-01 77.4% 57.8%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.56 46.0 4.51e-01 91.7% 88.0%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.56 37.0 3.15e-01 72.6% 38.8%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.93e-01 91.7% 73.2%
3f4rA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 43.0 3.81e-01 89.3% 80.7%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 42.0 2.89e-01 85.7% 36.3%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.54 40.0 2.75e-01 79.8% 100.0%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.54 34.0 3.26e-01 82.1% 54.6%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 38.0 2.97e-01 73.8% 70.7%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.95e-01 91.7% 41.4%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 39.0 3.49e-01 77.4% 62.2%
3p9xA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.53 46.0 3.58e-01 98.8% 98.5%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 3.03e-01 96.4% 39.8%
3kljA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 37.0 3.75e-01 75.0% 75.9%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.52 41.0 3.01e-01 88.1% 32.5%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.52 44.0 2.94e-01 96.4% 57.8%
3l4jA04 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 38.0 3.58e-01 78.6% 96.1%
3klkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 43.0 3.73e-01 97.6% 79.0%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 36.0 2.71e-01 75.0% 46.4%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.50 41.0 2.52e-01 95.2% 48.9%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.50 40.0 2.82e-01 90.5% 56.7%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4955671 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.72 57.0 5.86e-01 83.3% 97.5%
4029170 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.68 44.0 4.14e-01 70.2% 55.0%
3443190 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.64 49.0 3.63e-01 81.0% 92.1%
3228242 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.63 51.0 4.79e-01 85.7% 94.0%
3713384 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.62 50.0 3.92e-01 85.7% 72.9%
5075159 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.62 48.0 3.87e-01 82.1% 44.8%
5048874 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.62 50.0 3.96e-01 85.7% 75.7%
3259314 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.61 40.0 3.81e-01 72.6% 56.0%
3232904 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 45.0 3.33e-01 82.1% 29.8%
5072494 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.60 48.0 3.72e-01 84.5% 74.7%
3944596 9.1.1.27 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF_C 0.60 42.0 3.78e-01 72.6% 55.7%
3596980 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.59 45.0 3.45e-01 82.1% 68.3%
3676329 5.1.4.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.59 45.0 3.16e-01 82.1% 47.1%
3509892 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.59 48.0 3.71e-01 86.9% 76.6%
4024399 844.1.1.1 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub 0.58 47.0 3.33e-01 86.9% 61.9%
3517194 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.58 45.0 2.83e-01 84.5% 54.7%
3470022 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 41.0 3.58e-01 75.0% 77.0%
3411613 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 41.0 2.64e-01 72.6% 35.1%
3592763 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.58 49.0 3.70e-01 90.5% 74.2%
3600494 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.58 42.0 4.07e-01 82.1% 68.4%
4854906 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.57 37.0 3.59e-01 70.2% 57.3%
872 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.57 43.0 3.64e-01 79.8% 73.2%
3618645 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 47.0 3.95e-01 91.7% 79.3%
3306595 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.57 47.0 3.71e-01 90.5% 77.1%
4030530 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.57 38.0 3.36e-01 70.2% 47.5%
4028525 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.57 47.0 3.61e-01 90.5% 76.8%
3626785 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.56 47.0 3.64e-01 90.5% 77.2%
3629564 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 46.0 3.89e-01 90.5% 75.9%
3174725 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 42.0 2.74e-01 81.0% 58.7%
4927832 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 43.0 3.95e-01 84.5% 85.5%
5053329 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 3.60e-01 89.3% 55.8%
4345436 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.54 41.0 4.37e-01 92.9% 92.0%
3832069 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 30.0 3.27e-01 73.8% 66.2%
3790425 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 44.0 3.59e-01 90.5% 75.2%
3559120 220.1.1.173 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERK 0.54 36.0 3.26e-01 70.2% 82.5%
3714740 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.53 42.0 3.86e-01 90.5% 83.3%
3311784 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.52 39.0 3.49e-01 81.0% 96.8%
3605869 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.52 45.0 3.25e-01 98.8% 50.4%
3629117 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.52 39.0 3.27e-01 81.0% 98.0%
3691059 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.52 42.0 3.42e-01 90.5% 90.0%
3275492 5.1.4.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.52 43.0 2.79e-01 92.9% 56.0%
3695635 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 36.0 3.58e-01 77.4% 95.6%