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NC_054463.1__YP_010052804.1__KE333_gp55__00055

Bact-Vir

NC_054463.1__YP_010052804.1__KE333_gp55__00055

Identity

Accession:
NC_054463 ↗
Kingdom:
phage

Quality

95.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-136
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.78 54.0 5.45e-01 72.1% 94.3%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.77 55.0 5.20e-01 74.0% 86.9%
4kh3A00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.64 56.0 3.65e-01 99.0% 27.0%
4w8qA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.63 57.0 4.38e-01 100.0% 75.2%
1rwrA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.63 56.0 4.05e-01 99.0% 72.4%
3ljyA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.61 55.0 4.20e-01 100.0% 75.3%
3bh7B01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.58 52.0 4.25e-01 100.0% 71.0%
3petA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.55 48.0 3.88e-01 100.0% 59.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4497421 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.93 70.0 7.61e-01 97.1% 90.0%
4028157 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.87 70.0 6.32e-01 95.2% 64.4%
4965633 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.79 61.0 6.41e-01 96.2% 88.4%
4935712 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.79 61.0 5.38e-01 94.2% 57.2%
5020282 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.79 61.0 6.41e-01 96.2% 88.4%
4651440 207.5.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.79 55.0 5.45e-01 72.1% 94.5%
4459287 207.5.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.77 53.0 5.36e-01 71.2% 97.1%
1489336 207.5.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.77 55.0 5.27e-01 74.0% 89.8%
4935713 207.14.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.77 61.0 5.90e-01 100.0% 76.5%
5040589 207.14.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.75 61.0 5.78e-01 100.0% 72.8%
4981608 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.75 68.0 5.64e-01 98.1% 69.1%
4026564 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.72 67.0 5.33e-01 99.0% 59.5%
4020264 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.72 65.0 6.56e-01 98.1% 95.2%
3963707 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.72 49.0 5.48e-01 97.1% 92.5%
4929654 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.71 67.0 4.40e-01 100.0% 30.0%
2163978 207.10.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding 0.69 58.0 4.45e-01 91.3% 96.2%
5040588 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.68 62.0 5.85e-01 99.0% 84.8%
4932010 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.68 62.0 5.67e-01 99.0% 78.5%
4024424 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.66 58.0 5.59e-01 100.0% 83.3%
2410150 207.10.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding 0.66 58.0 4.36e-01 95.2% 49.2%
4932011 207.14.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.66 59.0 5.70e-01 100.0% 87.8%
5032703 207.14.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.65 59.0 5.69e-01 100.0% 87.8%
5006685 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.65 59.0 5.32e-01 99.0% 74.3%
3391275 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.63 49.0 4.90e-01 100.0% 81.0%
3708280 207.3.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Insect cysteine-rich antifreeze protein › Insect cysteine-rich antifreeze protein 0.62 41.0 4.44e-01 100.0% 81.2%
3901107 207.6.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.58 51.0 4.94e-01 99.0% 85.8%
3708278 208.7.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein 0.55 40.0 4.23e-01 99.0% 84.2%
3855439 207.8.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD 0.53 47.0 3.48e-01 100.0% 66.0%
D2 medium residues 137-190
PDB
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rwrA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.77 69.0 4.27e-01 100.0% 21.9%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.77 68.0 5.23e-01 100.0% 47.5%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.76 67.0 5.39e-01 100.0% 52.8%
4i84A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 65.0 4.04e-01 100.0% 45.3%
4w8qA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.72 62.0 4.11e-01 100.0% 41.9%
4kh3A00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.69 58.0 3.42e-01 100.0% 12.2%
1k5cA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.67 57.0 3.53e-01 100.0% 31.8%
2w7zA00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.67 55.0 3.85e-01 100.0% 30.0%
3sb4A01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.65 54.0 3.91e-01 100.0% 59.1%
3petA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.63 51.0 3.54e-01 100.0% 59.6%
1vq8O00 3.100.10.10 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › 0.62 51.0 4.16e-01 100.0% 60.0%
1w5dA02 3.50.80.20 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 0.60 50.0 4.21e-01 100.0% 84.3%
2ex2A02 3.50.80.20 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 0.59 50.0 4.16e-01 100.0% 83.5%
3qmvB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 49.0 3.26e-01 100.0% 68.9%
1sqsA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.56 46.0 3.17e-01 100.0% 63.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4497421 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.99 96.0 7.74e-01 100.0% 60.0%
4028157 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.98 93.0 6.61e-01 100.0% 40.0%
5033306 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.97 91.0 6.54e-01 100.0% 40.0%
3997590 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.94 87.0 8.41e-01 100.0% 90.0%
4929387 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.91 83.0 7.60e-01 100.0% 77.1%
4026564 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.90 81.0 5.40e-01 100.0% 27.7%
4020264 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.89 80.0 6.37e-01 100.0% 51.4%
4935712 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.83 73.0 5.33e-01 100.0% 37.9%
5041137 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.82 72.0 6.66e-01 100.0% 78.6%
4651440 207.5.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.79 71.0 5.57e-01 100.0% 52.7%
4935713 207.14.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.79 70.0 5.48e-01 100.0% 47.8%
5006685 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.79 69.0 5.13e-01 100.0% 38.6%
3838073 207.14.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.79 64.0 5.24e-01 100.0% 49.0%
5039608 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.78 69.0 6.32e-01 100.0% 78.6%
1489336 207.5.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.77 68.0 5.28e-01 100.0% 49.2%
4493843 207.5.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.77 68.0 5.44e-01 100.0% 55.2%
4472803 207.5.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.76 66.0 5.45e-01 100.0% 57.0%
4024424 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.76 66.0 5.12e-01 100.0% 45.8%
3165270 207.2.1.10 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin 0.76 65.0 4.17e-01 100.0% 33.8%
3838430 207.5.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.75 65.0 5.29e-01 100.0% 51.4%
2163978 207.10.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding 0.75 65.0 4.25e-01 100.0% 39.1%
3937084 207.6.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.71 53.0 3.63e-01 100.0% 21.6%
7233 207.5.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.71 62.0 4.98e-01 100.0% 72.9%
5062670 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.70 58.0 3.75e-01 100.0% 31.4%
3708280 207.3.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Insect cysteine-rich antifreeze protein › Insect cysteine-rich antifreeze protein 0.66 45.0 3.95e-01 98.1% 45.9%
3963707 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.66 51.0 4.67e-01 100.0% 62.5%
4069065 207.9.1.4 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Involucrin 0.64 52.0 3.96e-01 100.0% 42.0%
3870521 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.61 49.0 4.48e-01 92.6% 100.0%
3855439 207.8.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD 0.59 51.0 3.23e-01 100.0% 30.5%
D3 medium residues 191-268
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iplB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 44.0 2.94e-01 96.2% 34.6%
3shtA02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.52 39.0 3.78e-01 80.8% 72.2%
4yn3A02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.52 40.0 3.42e-01 85.9% 54.1%
6vhyC01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 42.0 2.75e-01 94.9% 39.8%
3dh1B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 38.0 3.16e-01 84.6% 80.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039608 207.14.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.68 46.0 4.83e-01 83.3% 78.6%
3587859 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.56 42.0 3.54e-01 82.1% 57.9%
3705309 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.56 43.0 3.98e-01 82.1% 82.0%
3838152 3010.1.1.0 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.55 39.0 4.17e-01 74.4% 98.4%
4615520 2493.1.1.0 a/b three-layered sandwiches › MurF and HprK N-domain-like › MurF and HprK N-domain-like › MurF and HprK N-domain-like 0.54 37.0 3.81e-01 83.3% 74.7%
4173307 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 39.0 3.00e-01 80.8% 40.5%
1262352 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.51 38.0 3.72e-01 80.8% 73.0%
4015607 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 42.0 2.95e-01 98.7% 50.3%
3990669 207.1.1.116 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.51 40.0 3.31e-01 89.7% 79.7%
3707408 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.51 41.0 2.94e-01 91.0% 90.0%
3829371 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 40.0 2.66e-01 88.5% 31.5%