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NC_054463.1__YP_010052805.1__KE333_gp56__00056

Bact-Vir

NC_054463.1__YP_010052805.1__KE333_gp56__00056

Identity

Accession:
NC_054463 ↗
Kingdom:
phage

Quality

74.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bakolyvirus› Ralstonia_phage_Bakoly

TaxID: 2759709

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-99
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pofA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 42.0 3.85e-01 70.1% 50.0%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.63 43.0 2.82e-01 70.1% 26.9%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 43.0 3.98e-01 71.4% 86.5%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.62 43.0 3.82e-01 76.6% 51.4%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.58 34.0 3.04e-01 76.6% 38.7%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 40.0 3.80e-01 72.7% 85.7%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.56 45.0 3.85e-01 88.3% 63.0%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 38.0 3.48e-01 70.1% 86.0%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 3.35e-01 77.9% 45.5%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 36.0 3.34e-01 71.4% 85.6%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 42.0 3.44e-01 90.9% 85.1%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 40.0 2.71e-01 83.1% 69.3%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 2.97e-01 100.0% 75.9%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 36.0 3.37e-01 72.7% 82.7%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.52 47.0 3.30e-01 100.0% 90.3%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.52e-01 85.7% 64.4%
1w18A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 44.0 2.74e-01 98.7% 73.0%
8gz3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 36.0 3.45e-01 76.6% 90.3%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 34.0 3.11e-01 71.4% 85.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026916 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.64 43.0 3.83e-01 70.1% 48.2%
3409288 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.63 41.0 3.72e-01 70.1% 47.3%
3784755 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 50.0 3.15e-01 87.0% 92.6%
4531223 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.62 57.0 4.18e-01 100.0% 91.8%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.57e-01 75.3% 83.8%
3313853 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 50.0 3.16e-01 89.6% 62.7%
4942779 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.61 44.0 3.84e-01 75.3% 62.6%
3990413 2.1.1.141 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.61 43.0 4.48e-01 74.0% 88.6%
4232994 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.61 43.0 3.83e-01 74.0% 53.6%
5010378 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.39e-01 71.4% 100.0%
3459303 3270.1.1.0 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.59 40.0 3.73e-01 70.1% 72.0%
5053785 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 33.0 2.62e-01 81.8% 26.5%
3250769 2003.1.2.130 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_2, NAD_binding_8 0.59 47.0 2.84e-01 87.0% 70.1%
4116396 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.59 51.0 3.71e-01 97.4% 77.6%
3813787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 3.69e-01 77.9% 78.1%
3254845 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.65e-01 81.8% 71.5%
4529819 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.57 39.0 3.27e-01 71.4% 75.6%
4606510 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.57 43.0 4.17e-01 81.8% 83.5%
3969131 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 37.0 3.51e-01 71.4% 86.3%
3393395 2.3.1.11 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like › Vein_beta-barrel 0.54 38.0 3.23e-01 74.0% 59.2%
3577548 331.12.1.0 ↗ a+b two layers › TBP-like › YugN-like › YugN-like 0.54 43.0 3.75e-01 100.0% 58.4%
3597484 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 44.0 2.67e-01 88.3% 34.1%
3544935 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.52 45.0 4.01e-01 97.4% 94.5%
3559265 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 36.0 2.98e-01 71.4% 74.5%
3774553 223.2.1.22 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin 0.52 44.0 3.06e-01 94.8% 58.5%
3713382 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.51 37.0 3.46e-01 80.5% 67.6%
3209501 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.51 39.0 2.59e-01 87.0% 42.1%
3231135 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 37.0 3.33e-01 77.9% 69.1%
4981234 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.50 34.0 3.62e-01 71.4% 83.1%