←Back to structures

NC_054464.1__YP_010052817.1__KE334_gp06__00006

Bact-Vir

NC_054464.1__YP_010052817.1__KE334_gp06__00006

Identity

Accession:
NC_054464 ↗
Kingdom:
phage

Quality

71.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gofduovirus› Edwardsiella_phage_Edno5

TaxID: 2419942

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-218
PDB
Domain cluster: rep: ON036882.1__UQS93168.1__Brutus_00025__00025__D2-124
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09979.15 best DUF2213 118.4 4.50e-34 98.8% 98.8%
D2 high residues 343-415
PDB
Domain cluster: rep: LC644971.1__BCZ75766.1__X__00011__D308-377
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.79 35.0 3.45e-01 97.3% 40.0%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 38.0 3.42e-01 76.7% 42.0%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.67 47.0 4.45e-01 74.0% 79.1%
5tcsA01 1.10.418.30 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Ncd80 complex, Ncd80 subunit 0.66 48.0 4.24e-01 78.1% 67.0%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.65 49.0 4.39e-01 84.9% 58.0%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 38.0 3.23e-01 76.7% 36.8%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.64 44.0 4.16e-01 72.6% 89.9%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 47.0 4.20e-01 93.2% 56.3%
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.62 41.0 4.41e-01 83.6% 79.4%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 50.0 3.50e-01 87.7% 30.2%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 51.0 4.14e-01 95.9% 51.5%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.59 35.0 3.53e-01 75.3% 57.5%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 46.0 3.99e-01 93.2% 55.4%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 51.0 4.94e-01 94.5% 97.5%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.58 43.0 4.51e-01 76.7% 93.9%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 44.0 4.29e-01 83.6% 75.3%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.58 44.0 4.30e-01 80.8% 74.1%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.57 41.0 3.79e-01 78.1% 95.0%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 47.0 3.77e-01 90.4% 58.0%
4d3zA02 1.10.132.130 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.57 45.0 4.00e-01 87.7% 83.6%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.57 40.0 3.79e-01 93.2% 61.1%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 36.0 3.81e-01 82.2% 72.3%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.57 43.0 3.43e-01 83.6% 81.0%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 4.66e-01 82.2% 100.0%
2xheA03 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.56 41.0 3.52e-01 79.5% 86.0%
1af7A01 1.10.155.10 Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain 0.53 39.0 3.82e-01 79.5% 71.2%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 35.0 3.62e-01 72.6% 70.4%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.53 43.0 2.89e-01 91.8% 93.4%
1qguB04 1.20.89.10 Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 0.52 43.0 4.14e-01 91.8% 79.5%
3sqnA02 1.10.1790.40 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.51 37.0 3.22e-01 78.1% 77.1%
3kp1E02 1.10.8.1000 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like 0.51 38.0 3.84e-01 83.6% 85.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942669 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.92 86.0 8.59e-01 100.0% 98.7%
3933324 193.1.1.0 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like 0.74 59.0 5.03e-01 86.3% 64.3%
3578270 2008.1.1.94 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5614 0.72 52.0 3.85e-01 76.7% 87.4%
2514241 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.71 58.0 4.23e-01 89.0% 60.9%
3886394 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 35.0 3.18e-01 74.0% 36.8%
4009124 639.2.1.5 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 0.66 37.0 4.04e-01 72.6% 66.7%
3758701 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 39.0 3.56e-01 100.0% 46.3%
4994067 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.64 48.0 4.30e-01 79.5% 66.0%
4956930 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 48.0 3.32e-01 91.8% 25.0%
3405912 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 51.0 3.70e-01 91.8% 35.1%
3785926 101.1.15.3 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C_fung 0.61 36.0 3.16e-01 71.2% 37.4%
3701737 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.59 41.0 4.17e-01 83.6% 74.3%
4981745 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.59 53.0 5.34e-01 98.6% 100.0%
4021753 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 41.0 3.87e-01 71.2% 85.9%
5060558 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 53.0 5.13e-01 100.0% 100.0%
5079025 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.58 48.0 4.97e-01 90.4% 100.0%
4936946 1134.1.2.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain 0.57 42.0 4.42e-01 87.7% 98.3%
3229576 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.57 50.0 4.84e-01 95.9% 100.0%
3502686 2484.1.1.88 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ParM_N 0.57 44.0 3.39e-01 83.6% 41.2%
5029782 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.55 45.0 4.20e-01 87.7% 100.0%
5071069 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 43.0 3.08e-01 87.7% 62.5%
3693574 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.54 36.0 3.53e-01 80.8% 63.7%
1716751 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.53 47.0 4.46e-01 100.0% 97.7%
3228852 103.11.1.1 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N 0.53 37.0 3.85e-01 80.8% 81.5%
4963200 601.7.1.34 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 0.53 42.0 3.76e-01 84.9% 82.0%
3391169 103.4.1.25 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF27628 0.53 42.0 4.30e-01 89.0% 97.1%
3699171 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 39.0 2.45e-01 79.5% 34.2%
3469499 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.51 42.0 3.31e-01 91.8% 43.3%