←Back to structures
NC_054464.1__YP_010052820.1__KE334_gp09__00009
Bact-VirNC_054464.1__YP_010052820.1__KE334_gp09__00009
Identity
- Accession:
- NC_054464 ↗
- Kingdom:
- phage
Quality
89.4
mean pLDDT
Taxonomy
TaxID: 2419942
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-87
Domain cluster:
rep: OM293957.1__UOK17475.1__vBBaMIFTN8_10__00010__D2-85
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jl8102 | 3.30.160.850 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 24.0 | 3.20e-01 | 71.8% | 66.7% |
| 8dvhB01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.57 | 45.0 | 3.61e-01 | 87.1% | 100.0% |
| 2n17A00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.56 | 33.0 | 3.77e-01 | 100.0% | 83.9% |
| 2zg5A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 38.0 | 2.88e-01 | 71.8% | 99.5% |
| 1p99A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 43.0 | 3.74e-01 | 88.2% | 95.1% |
| 6ztgA01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.52 | 40.0 | 4.21e-01 | 87.1% | 100.0% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.68e-01 | 88.2% | 100.0% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 41.0 | 4.07e-01 | 88.2% | 89.9% |
| 2xxpA02 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.50 | 44.0 | 3.13e-01 | 100.0% | 40.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3943129 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.89 | 79.0 | 7.94e-01 | 100.0% | 94.1% |
| 5083883 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 34.0 | 4.36e-01 | 87.1% | 100.0% |
| 4133267 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.61 | 36.0 | 4.19e-01 | 83.5% | 89.1% |
| 4939413 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.61 | 36.0 | 4.29e-01 | 83.5% | 100.0% |
| None | — | 0.59 | 47.0 | 2.95e-01 | 89.4% | 38.2% | |
| 4015747 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.59 | 48.0 | 3.49e-01 | 92.9% | 48.0% |
| 3390872 | 304.9.1.182 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF30082 | 0.58 | 49.0 | 4.90e-01 | 97.6% | 94.4% |
| 3413368 | 304.28.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › NPC1_MLD | 0.58 | 49.0 | 3.60e-01 | 100.0% | 88.3% |
| 4494622 | 206.1.1.16 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › IucA_IucC,FhuF | 0.54 | 44.0 | 2.79e-01 | 88.2% | 19.2% |
| 3975092 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.54 | 23.0 | 2.51e-01 | 89.4% | 38.7% |
| 3964857 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.54 | 45.0 | 3.35e-01 | 97.6% | 42.4% |
| 4969741 | 205.1.1.17 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 | 0.53 | 45.0 | 3.78e-01 | 96.5% | 96.0% |
| 3980375 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 40.0 | 2.77e-01 | 83.5% | 48.4% |
| 5077058 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.52 | 41.0 | 3.71e-01 | 88.2% | 93.6% |
| 3788818 | 868.1.1.5 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 | 0.52 | 46.0 | 3.31e-01 | 100.0% | 89.9% |
| 4170977 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.51 | 40.0 | 3.66e-01 | 90.6% | 95.2% |
| 4457759 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.51 | 37.0 | 3.66e-01 | 77.6% | 95.6% |
| 4053523 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.50 | 35.0 | 3.43e-01 | 75.3% | 77.0% |
| 4004354 | 10.12.1.115 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 | 0.50 | 45.0 | 3.87e-01 | 100.0% | 70.4% |