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NC_054464.1__YP_010052831.1__KE334_gp20__00020

Bact-Vir

NC_054464.1__YP_010052831.1__KE334_gp20__00020

Identity

Accession:
NC_054464 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gofduovirus› Edwardsiella_phage_Edno5

TaxID: 2419942

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-70
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 50.0 3.92e-01 72.9% 36.2%
3cniA00 3.40.1710.10 Alpha Beta › 3-Layer(aba) Sandwich › abc type-2 transporter like fold › abc type-2 transporter like domain 0.65 32.0 2.53e-01 72.9% 23.4%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.64 44.0 4.86e-01 71.4% 90.9%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 45.0 4.06e-01 100.0% 61.7%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.57 40.0 2.45e-01 74.3% 12.6%
2incA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.54 45.0 2.66e-01 90.0% 49.5%
3lf7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 38.0 2.44e-01 80.0% 48.1%
3mk7C01 6.10.280.130 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 36.0 3.30e-01 75.7% 59.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4021804 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.68 31.0 2.76e-01 72.9% 31.6%
None — 0.68 47.0 3.53e-01 71.4% 55.8%
3688034 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.67 46.0 4.09e-01 71.4% 72.0%
4000496 6171.1.1.0 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.65 44.0 3.18e-01 70.0% 45.5%
3173007 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 44.0 4.44e-01 70.0% 100.0%
3907976 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.65 41.0 4.88e-01 71.4% 100.0%
4979997 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 49.0 3.96e-01 82.9% 54.3%
4011583 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.64 46.0 4.17e-01 80.0% 55.8%
3720327 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 46.0 4.15e-01 78.6% 55.0%
2035461 3380.1.1.1 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.62 44.0 4.74e-01 77.1% 92.9%
3548118 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.61 38.0 4.29e-01 70.0% 86.0%
3908093 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.61 39.0 4.45e-01 70.0% 100.0%
3201162 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.61 47.0 4.63e-01 85.7% 100.0%
3426696 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 37.0 4.30e-01 70.0% 97.7%
3918443 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 38.0 4.43e-01 72.9% 97.8%
3519254 6171.1.1.0 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.58 43.0 3.23e-01 80.0% 47.2%
4926891 377.1.1.126 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH 0.57 36.0 4.19e-01 74.3% 100.0%
5028122 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 47.0 3.86e-01 94.3% 58.5%
5071881 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.55 37.0 3.91e-01 70.0% 81.7%
4933888 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.54 46.0 2.80e-01 97.1% 35.0%
3797415 375.10.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.52 34.0 2.96e-01 70.0% 39.2%
4947340 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.52 39.0 2.33e-01 78.6% 43.9%
5072114 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 42.0 3.37e-01 95.7% 92.7%