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NC_054464.1__YP_010052836.1__KE334_gp25__00025

Bact-Vir

NC_054464.1__YP_010052836.1__KE334_gp25__00025

Identity

Accession:
NC_054464 ↗
Kingdom:
phage

Quality

97.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gofduovirus› Edwardsiella_phage_Edno5

TaxID: 2419942

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-97
PDB
Domain cluster: rep: OR180307.1__WNT46115.1__X__00018__D16-112
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22479.3 best Pam3_gp18 88.3 5.80e-25 99.0% 95.0%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 34.0 3.96e-01 74.0% 60.6%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.72 34.0 3.65e-01 72.9% 51.2%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 37.0 3.99e-01 77.1% 59.3%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.65 52.0 5.35e-01 90.6% 91.1%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 40.0 3.66e-01 90.6% 47.7%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.61 35.0 4.31e-01 77.1% 90.0%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 4.34e-01 93.8% 91.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 43.0 3.88e-01 84.4% 98.6%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 4.31e-01 90.6% 86.5%
1w0pA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 44.0 2.95e-01 85.4% 48.0%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 34.0 4.06e-01 92.7% 96.8%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 4.25e-01 95.8% 89.6%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.55 43.0 3.98e-01 84.4% 85.5%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 4.13e-01 95.8% 89.1%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.53 35.0 4.07e-01 71.9% 92.8%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 4.09e-01 95.8% 75.9%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 44.0 2.97e-01 92.7% 75.6%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.52 44.0 3.82e-01 93.8% 76.3%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 39.0 3.41e-01 80.2% 53.7%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.80e-01 94.8% 65.0%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.80e-01 95.8% 83.1%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 43.0 2.96e-01 92.7% 51.2%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 44.0 4.09e-01 92.7% 85.1%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 45.0 3.90e-01 99.0% 87.5%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 4.02e-01 100.0% 90.8%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 32.0 3.18e-01 86.5% 58.3%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 44.0 3.21e-01 100.0% 95.4%
1inyA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 44.0 2.98e-01 97.9% 48.7%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.62e-01 100.0% 64.8%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 33.0 3.23e-01 72.9% 60.8%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.51 38.0 3.99e-01 90.6% 91.7%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.50 43.0 3.05e-01 96.9% 86.3%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 3.75e-01 94.8% 69.2%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.50 41.0 3.63e-01 90.6% 63.6%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1760289 809.1.1.3 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF3862 0.72 34.0 3.65e-01 72.9% 51.2%
3510850 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.70 56.0 5.82e-01 89.6% 91.1%
5019887 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.68 36.0 4.12e-01 79.2% 68.5%
3968112 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.67 41.0 3.49e-01 92.7% 38.3%
185415 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.65 52.0 5.35e-01 90.6% 91.1%
3391728 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.65 50.0 5.33e-01 90.6% 95.2%
4954308 210.1.1.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.63 45.0 3.46e-01 75.0% 88.8%
3814053 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.58 52.0 4.64e-01 100.0% 94.1%
3264296 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 51.0 4.50e-01 100.0% 82.1%
3225961 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.56 50.0 4.54e-01 100.0% 95.4%
3990496 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 38.0 4.40e-01 70.8% 97.1%
4464657 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 35.0 3.81e-01 85.4% 76.2%
4976250 3662.1.1.0 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.56 42.0 4.00e-01 80.2% 96.5%
3709589 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.55 49.0 4.06e-01 100.0% 69.7%
3228027 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.55 48.0 4.50e-01 100.0% 97.6%
3223473 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.55 48.0 4.44e-01 99.0% 96.8%
3213637 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.55 48.0 4.42e-01 100.0% 93.1%
3223735 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.55 48.0 4.50e-01 99.0% 97.5%
3243158 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.55 49.0 4.39e-01 100.0% 89.6%
3231376 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.55 48.0 4.41e-01 100.0% 93.1%
3647278 3662.1.1.3 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC4 0.55 44.0 4.12e-01 85.4% 99.1%
3244517 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.54 48.0 4.42e-01 100.0% 96.0%
3221683 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.54 47.0 4.35e-01 100.0% 93.8%
3216873 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.54 46.0 4.18e-01 95.8% 94.6%
3212038 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.53 46.0 4.14e-01 99.0% 87.9%
4558617 12.6.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Bac_rhamnosid_C 0.53 38.0 4.13e-01 96.9% 88.7%
3234784 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.53 47.0 4.17e-01 100.0% 90.0%
3217795 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.53 46.0 4.28e-01 100.0% 95.2%
3837575 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.53 46.0 3.12e-01 96.9% 96.4%
3809302 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 39.0 4.13e-01 100.0% 89.4%
1002449 3662.1.1.1 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 0.52 44.0 4.10e-01 91.7% 83.6%
4959571 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 43.0 3.22e-01 91.7% 98.8%
3267290 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 42.0 2.89e-01 89.6% 25.4%
3509569 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 39.0 3.79e-01 82.3% 100.0%
3573723 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.51 41.0 2.71e-01 91.7% 27.3%
4954762 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.51 43.0 3.95e-01 93.8% 91.2%
4951537 850.1.1.2 ↗ a+b three layers › Hypothetical protein Ta1206-like › Hypothetical protein Ta1206-like › Hypothetical protein Ta1206-like › DUF1805 0.51 41.0 4.11e-01 91.7% 100.0%
4998236 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.51 45.0 2.88e-01 97.9% 85.3%
3767960 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.50 41.0 3.83e-01 90.6% 75.2%
5060665 5.1.11.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta_propel 0.50 41.0 2.41e-01 90.6% 15.3%