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NC_054464.1__YP_010052847.1__KE334_gp36__00036

Bact-Vir

NC_054464.1__YP_010052847.1__KE334_gp36__00036

Identity

Accession:
NC_054464 ↗
Kingdom:
phage

Quality

82.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.71 49.0 3.68e-01 71.0% 77.6%
2pybA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.71 53.0 3.97e-01 79.0% 84.1%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 5.08e-01 100.0% 66.3%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 5.23e-01 100.0% 65.6%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.69 42.0 4.91e-01 85.5% 86.7%
3f2eA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 54.0 4.98e-01 93.5% 67.5%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 5.61e-01 95.2% 100.0%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 56.0 5.11e-01 95.2% 80.0%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.66 45.0 4.02e-01 71.0% 56.3%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 50.0 3.62e-01 87.1% 27.7%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.65 56.0 4.95e-01 100.0% 89.4%
3djbA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.64 47.0 4.13e-01 91.9% 52.1%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 41.0 3.80e-01 80.6% 51.9%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.63 52.0 4.10e-01 91.9% 48.9%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 43.0 4.20e-01 71.0% 70.1%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 49.0 4.05e-01 85.5% 76.4%
3pmcA00 1.10.490.70 Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain 0.62 53.0 4.22e-01 98.4% 49.2%
3u5nA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 46.0 3.61e-01 77.4% 50.8%
4a64C03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.62 50.0 4.43e-01 96.8% 63.0%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.61 41.0 4.03e-01 77.4% 64.2%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.60 48.0 4.36e-01 90.3% 75.3%
2wzkA02 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.60 49.0 4.06e-01 96.8% 54.3%
2b1eA04 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.59 48.0 3.90e-01 91.9% 61.4%
1xdpA01 1.20.58.310 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Polyphosphate kinase N-terminal domain 0.59 48.0 4.12e-01 91.9% 78.1%
1l3pA00 1.20.120.320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen 0.59 49.0 4.32e-01 100.0% 85.3%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.59 51.0 4.75e-01 98.4% 93.8%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 49.0 3.92e-01 100.0% 44.8%
5z7qA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.59 48.0 3.59e-01 95.2% 63.6%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 45.0 3.28e-01 85.5% 33.3%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 47.0 4.79e-01 96.8% 100.0%
2gl2B00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 41.0 3.44e-01 74.2% 52.3%
3di2A00 1.20.1250.50 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 40.0 3.38e-01 74.2% 58.3%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.58 48.0 4.27e-01 100.0% 64.6%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.57 47.0 4.43e-01 98.4% 74.4%
4ks9A01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.57 46.0 3.78e-01 95.2% 57.9%
3zgzA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.57 46.0 3.52e-01 100.0% 55.9%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.56 48.0 4.37e-01 100.0% 95.5%
3tahA02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 46.0 4.07e-01 88.7% 86.4%
4bvxA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 46.0 3.93e-01 93.5% 70.5%
2cazE00 1.20.1440.200 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Vps28 N-terminal domain 0.56 48.0 4.14e-01 98.4% 71.3%
2v4jA01 6.10.140.1420 Special › Helix non-globular › Helix Hairpins › 0.55 38.0 3.83e-01 71.0% 79.4%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 41.0 3.97e-01 85.5% 84.0%
2hdoA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 36.0 3.63e-01 100.0% 65.6%
1wlmA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 43.0 3.70e-01 88.7% 65.0%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 45.0 3.76e-01 91.9% 76.9%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.53 44.0 3.58e-01 98.4% 54.4%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 3.65e-01 90.3% 79.2%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 42.0 3.37e-01 96.8% 89.3%
2doeA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.52 43.0 4.01e-01 98.4% 80.7%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.51 37.0 3.86e-01 90.3% 91.2%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.51 40.0 3.88e-01 91.9% 78.1%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.51 39.0 3.56e-01 83.9% 72.1%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.51 40.0 3.74e-01 88.7% 93.8%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3606798 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 56.0 5.89e-01 100.0% 100.0%
3797917 101.1.1.399 alpha arrays › HTH › HTH › Three-helical HTH › RhoGAP 0.68 58.0 5.46e-01 100.0% 90.0%
5048617 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.28e-01 98.4% 73.8%
3589591 601.32.1.1 alpha bundles › Four-helical up-and-down bundle › FusB family N-terminal domain › FusB family N-terminal domain › EF-G-binding_N 0.68 60.0 5.52e-01 100.0% 83.7%
3824559 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.67 56.0 4.57e-01 96.8% 52.8%
3880637 3755.3.1.465 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A 0.67 47.0 3.58e-01 74.2% 32.9%
5005724 3755.3.1.637 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.67 46.0 3.04e-01 71.0% 39.1%
4580730 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 53.0 5.45e-01 98.4% 96.7%
3726085 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.66 53.0 4.87e-01 100.0% 68.2%
4489939 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.66 53.0 5.43e-01 98.4% 95.0%
3466475 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.65 53.0 4.25e-01 95.2% 43.8%
3650360 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 56.0 4.63e-01 100.0% 53.3%
4093240 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.65 50.0 5.26e-01 93.5% 98.2%
3682077 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.65 46.0 3.59e-01 74.2% 49.2%
3545387 3602.1.1.0 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.65 46.0 3.74e-01 74.2% 41.8%
3191588 610.3.1.0 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.64 56.0 3.89e-01 100.0% 32.1%
5041482 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.64 43.0 3.79e-01 71.0% 52.6%
5048577 621.1.1.0 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.64 54.0 5.03e-01 98.4% 95.0%
5041402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 5.20e-01 96.8% 87.7%
4050022 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.64 49.0 5.12e-01 96.8% 96.4%
3455132 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.64 53.0 4.38e-01 100.0% 50.0%
3789417 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 53.0 4.46e-01 100.0% 53.0%
4381449 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 5.09e-01 100.0% 84.3%
3708809 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 52.0 5.19e-01 98.4% 95.4%
3741939 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.63 43.0 3.87e-01 71.0% 52.9%
3927845 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 49.0 3.83e-01 83.9% 60.0%
4584625 610.3.1.0 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.63 53.0 3.65e-01 96.8% 27.8%
3646654 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 52.0 4.28e-01 100.0% 50.0%
5072615 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.62 42.0 3.53e-01 71.0% 61.8%
3651508 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 50.0 5.15e-01 93.5% 93.3%
4543264 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 3.79e-01 95.2% 36.4%
3384514 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.61 47.0 4.36e-01 95.2% 66.7%
5053257 601.28.1.1 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › VPS28 0.61 51.0 4.45e-01 93.5% 90.5%
3742006 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.61 51.0 3.66e-01 100.0% 64.7%
3929377 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 50.0 4.49e-01 90.3% 81.2%
3723823 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.65e-01 100.0% 98.9%
3340355 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 51.0 4.99e-01 100.0% 90.0%
3309133 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.59 47.0 4.30e-01 91.9% 65.9%
3871164 108.1.1.120 alpha arrays › EF-hand › EF-hand-related › EF-hand › PF27858 0.58 47.0 3.75e-01 88.7% 60.0%
3831136 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.58 45.0 3.74e-01 90.3% 48.0%
3670628 244.3.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.58 48.0 3.80e-01 100.0% 83.3%
3733392 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.58 48.0 4.08e-01 100.0% 94.8%
3906058 2004.1.1.208 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.56 47.0 3.26e-01 100.0% 41.7%
3686953 101.1.17.2 alpha arrays › HTH › HTH › FF domain › FF 0.55 46.0 4.49e-01 100.0% 90.0%
3412505 195.1.1.3 alpha complex topology › NusB-like › NusB-like › NusB-like › NSUN5_N 0.55 48.0 4.08e-01 100.0% 68.6%
3816224 101.1.17.2 alpha arrays › HTH › HTH › FF domain › FF 0.54 46.0 4.48e-01 98.4% 88.6%
3605318 109.4.1.2084 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7051 0.54 45.0 3.16e-01 91.9% 33.3%
158724 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.53 42.0 3.37e-01 96.8% 88.7%
4556484 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 40.0 3.39e-01 90.3% 70.4%
4476425 304.41.1.1 a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.51 43.0 3.41e-01 100.0% 67.6%
4062288 304.41.1.1 a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.51 38.0 3.03e-01 87.1% 64.0%
3569305 109.4.1.1158 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IPO11 0.50 45.0 2.71e-01 100.0% 16.1%