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NC_054466.1__YP_010053019.1__KE336_gp49__00049

Bact-Vir

NC_054466.1__YP_010053019.1__KE336_gp49__00049

Identity

Accession:
NC_054466 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kunmingvirus› Aeromonas_phage_4_D05

TaxID: 2588099

Cluster

View cluster (116 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 101-158
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23982.3 best XM1_gp53_minor_capsid 28.5 1.70e-06 100.0% 37.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.76 68.0 5.81e-01 100.0% 62.4%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.73 62.0 5.28e-01 100.0% 58.9%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.66 58.0 5.45e-01 100.0% 98.6%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.63 55.0 5.10e-01 100.0% 98.6%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.54 40.0 3.91e-01 86.2% 75.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945811 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.98 91.0 8.99e-01 98.3% 93.3%
3513462 70.4.1.8 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.91 81.0 8.08e-01 100.0% 93.3%
2640772 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.77 69.0 5.70e-01 100.0% 58.0%
5002645 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.75 64.0 6.43e-01 100.0% 94.9%
2808420 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.75 63.0 5.12e-01 100.0% 50.5%
5039270 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.74 60.0 6.14e-01 98.3% 90.9%
5083817 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.72 64.0 6.18e-01 100.0% 98.5%
5083816 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.70 62.0 5.89e-01 100.0% 90.0%
4990371 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.66 58.0 5.51e-01 100.0% 94.3%
3227803 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.66 58.0 5.64e-01 100.0% 98.5%
4602455 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.65 57.0 5.32e-01 100.0% 94.5%
3398750 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.64 55.0 5.03e-01 100.0% 92.5%
3205316 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.63 55.0 4.78e-01 100.0% 91.1%
3253793 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 39.0 3.28e-01 100.0% 36.2%
5001822 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 3.20e-01 84.5% 86.9%
3301005 10.12.1.17 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.54 39.0 2.61e-01 82.8% 82.9%
3242100 376.1.5.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger 0.53 43.0 4.37e-01 100.0% 96.4%
5051439 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.52 38.0 3.02e-01 84.5% 92.1%
2521874 4356.1.1.2 ↗ beta complex topology › Coronavirus nsp1 › Coronavirus nsp1 › Coronavirus nsp1 › CNV-Replicase_N 0.51 40.0 3.27e-01 87.9% 66.7%
3466090 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.51 41.0 2.74e-01 100.0% 22.3%
D2 medium residues 20-99
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF23982.3 best XM1_gp53_minor_capsid 54.3 2.00e-14 100.0% 49.4%
PF22758.3 Phage_cement 39.3 9.90e-10 98.8% 44.5%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.67 49.0 4.69e-01 98.8% 66.3%
2g6gA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.60 44.0 3.37e-01 86.3% 32.3%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.55 45.0 4.65e-01 96.2% 97.4%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.53 45.0 3.91e-01 93.8% 100.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948608 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.98 75.0 8.42e-01 81.2% 96.9%
2559744 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.77 50.0 5.69e-01 92.5% 89.8%
4956897 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.61 53.0 5.31e-01 95.0% 96.2%
4991571 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.60 52.0 5.22e-01 93.8% 95.0%
3959516 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.59 50.0 5.16e-01 93.8% 100.0%