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NC_054636.1__YP_010053093.1__KGB36_gp56__00049

Bact-Vir

NC_054636.1__YP_010053093.1__KGB36_gp56__00049

Identity

Accession:
NC_054636 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-54
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lddA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 75.0 6.73e-01 100.0% 83.8%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 69.0 5.70e-01 100.0% 73.5%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 68.0 5.95e-01 100.0% 70.7%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 67.0 5.81e-01 100.0% 71.8%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 66.0 5.62e-01 100.0% 67.0%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 67.0 5.72e-01 100.0% 68.2%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 5.33e-01 100.0% 60.0%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.76 64.0 5.24e-01 100.0% 50.0%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 5.79e-01 100.0% 85.2%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 65.0 5.28e-01 100.0% 62.1%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.75 65.0 4.32e-01 100.0% 25.7%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 65.0 6.17e-01 100.0% 92.2%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 64.0 5.51e-01 100.0% 83.9%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 65.0 5.42e-01 100.0% 66.3%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 65.0 4.75e-01 100.0% 38.6%
2mbfA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 62.0 5.18e-01 100.0% 74.2%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 5.06e-01 100.0% 67.6%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 63.0 5.24e-01 100.0% 60.6%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 61.0 5.13e-01 100.0% 73.7%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 60.0 5.21e-01 100.0% 66.7%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 57.0 5.18e-01 92.5% 86.1%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 4.99e-01 100.0% 71.1%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 4.44e-01 100.0% 38.7%
1wlzA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.69 59.0 5.21e-01 100.0% 78.8%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.45e-01 100.0% 81.0%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 5.47e-01 100.0% 78.3%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 5.05e-01 100.0% 78.6%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 5.45e-01 100.0% 86.2%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.68 58.0 5.26e-01 100.0% 86.7%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.78e-01 100.0% 61.7%
2p6rA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.67 58.0 3.86e-01 100.0% 27.1%
2i71A02 1.10.3740.10 Mainly Alpha › Orthogonal Bundle › SSO1389-like fold › SSO1389-like domains 0.66 56.0 4.14e-01 100.0% 80.4%
4pcwC00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.65 52.0 4.45e-01 92.5% 65.9%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 4.72e-01 100.0% 64.7%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 5.36e-01 100.0% 93.1%
1tizA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 53.0 5.02e-01 100.0% 82.1%
1tuzA00 1.10.238.110 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Diacylglycerol kinase alpha. 0.63 53.0 4.20e-01 100.0% 59.3%
3c1dB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 5.19e-01 98.1% 87.1%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 49.0 4.51e-01 94.3% 82.7%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 47.0 4.78e-01 100.0% 90.0%
3cf6E01 1.10.8.1240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 43.0 4.54e-01 75.5% 97.8%
3bwxA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 51.0 3.31e-01 100.0% 55.1%
1scmB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 51.0 4.76e-01 100.0% 83.8%
6pw7A01 1.10.238.180 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.59 47.0 4.32e-01 94.3% 68.0%
4ygbB00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 46.0 4.46e-01 92.5% 84.1%
1pulA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 46.0 3.80e-01 92.5% 52.4%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.57 42.0 3.87e-01 94.3% 58.7%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.56 47.0 4.23e-01 100.0% 70.5%
5v89A02 1.10.238.200 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Cullin, PONY binding domain 0.53 45.0 3.71e-01 100.0% 53.9%
1sseB00 1.10.238.100 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B 0.51 37.0 3.36e-01 92.5% 52.3%
7y4rB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.51 38.0 3.00e-01 79.2% 50.9%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4977903 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.88 79.0 6.82e-01 100.0% 85.0%
5000306 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 76.0 6.45e-01 100.0% 74.1%
5042403 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.83 73.0 5.41e-01 100.0% 43.7%
4964961 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 73.0 6.02e-01 100.0% 62.1%
5010623 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 72.0 5.46e-01 100.0% 45.6%
5034107 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 71.0 6.13e-01 100.0% 71.8%
4997786 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 71.0 6.12e-01 100.0% 67.1%
3577481 101.1.2.416 alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.81 72.0 5.08e-01 100.0% 35.0%
5015083 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 69.0 6.08e-01 100.0% 73.8%
4994592 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 70.0 6.58e-01 100.0% 96.9%
3503213 101.1.2.74 alpha arrays › HTH › HTH › winged helix domain › Cnd2 0.79 68.0 5.72e-01 100.0% 88.3%
5019593 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 68.0 5.89e-01 100.0% 69.4%
4928997 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 69.0 5.84e-01 100.0% 80.0%
4932302 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.79 67.0 5.98e-01 100.0% 71.2%
4979532 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 67.0 5.96e-01 100.0% 71.2%
4993671 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 66.0 5.70e-01 100.0% 67.8%
5006986 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.79 67.0 5.46e-01 100.0% 54.3%
5002286 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 67.0 4.98e-01 100.0% 42.1%
3832037 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.78 68.0 4.27e-01 100.0% 23.6%
3518446 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 67.0 6.63e-01 100.0% 94.5%
3602364 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.78 67.0 5.70e-01 100.0% 75.6%
3602437 239.1.1.7 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.78 66.0 5.05e-01 100.0% 48.5%
3720581 101.1.2.539 alpha arrays › HTH › HTH › winged helix domain › WH_GDS1 0.78 66.0 5.55e-01 100.0% 80.0%
5070358 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.77 65.0 4.86e-01 100.0% 42.8%
4966069 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 67.0 5.69e-01 100.0% 67.8%
5081885 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 65.0 5.78e-01 100.0% 71.2%
5038484 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.77 65.0 4.78e-01 100.0% 44.7%
4988334 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.76 64.0 5.48e-01 100.0% 63.3%
4982868 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 5.60e-01 100.0% 67.1%
3741636 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 5.44e-01 100.0% 64.5%
5081804 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.76 68.0 6.02e-01 100.0% 72.0%
5060421 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 6.27e-01 100.0% 88.3%
5062452 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.75 64.0 5.56e-01 100.0% 75.3%
4934434 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 63.0 4.70e-01 100.0% 40.0%
3497583 108.1.1.98 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.75 62.0 4.82e-01 92.5% 47.8%
4965236 101.1.2.952 alpha arrays › HTH › HTH › winged helix domain › PF29290 0.75 65.0 6.30e-01 100.0% 91.7%
4989853 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 66.0 5.20e-01 100.0% 53.6%
5075915 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 62.0 5.45e-01 100.0% 67.1%
4982329 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 66.0 5.74e-01 100.0% 67.5%
5060301 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.74 66.0 5.39e-01 100.0% 56.8%
3786852 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.74 63.0 5.47e-01 100.0% 77.6%
5055033 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.74 61.0 5.29e-01 100.0% 67.8%
5059989 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 61.0 4.82e-01 100.0% 47.5%
3724780 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 64.0 4.07e-01 100.0% 48.8%
3895346 101.1.2.575 alpha arrays › HTH › HTH › winged helix domain › PF25894 0.72 64.0 5.02e-01 100.0% 52.7%
3185357 2486.1.1.11 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_2 0.72 62.0 3.61e-01 100.0% 10.7%
5032533 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 5.22e-01 100.0% 71.8%
5077469 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 4.98e-01 100.0% 74.3%
3997569 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 5.58e-01 100.0% 85.7%
4956394 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 4.84e-01 100.0% 58.1%
4994527 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.23e-01 100.0% 73.8%
5067342 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.03e-01 100.0% 67.8%
5010525 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 58.0 5.19e-01 100.0% 65.8%
4958659 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.69 60.0 5.08e-01 100.0% 61.1%
5046546 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 3.92e-01 100.0% 46.1%
4945924 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.57e-01 100.0% 89.2%
5011311 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 5.25e-01 100.0% 77.3%
5055623 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.67 57.0 5.44e-01 100.0% 83.1%
4973418 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.13e-01 98.1% 81.4%
5018899 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 53.0 5.15e-01 94.3% 84.1%
3477557 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.66 52.0 3.91e-01 92.5% 37.3%
3413973 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.66 55.0 4.43e-01 100.0% 49.6%
4954067 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.66 56.0 5.34e-01 100.0% 88.9%
5053142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 4.32e-01 100.0% 49.2%
3584449 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.65 56.0 4.97e-01 100.0% 68.8%
3472510 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.65 56.0 4.62e-01 100.0% 67.0%
3992134 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.64 55.0 5.21e-01 100.0% 83.1%
3407437 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 53.0 4.30e-01 100.0% 53.1%
3472508 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 52.0 4.33e-01 100.0% 61.0%
3370898 108.1.1.101 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 0.62 52.0 3.39e-01 100.0% 30.4%
3203792 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.62 50.0 3.04e-01 100.0% 12.4%
4219514 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.61 52.0 4.61e-01 100.0% 68.8%
3968229 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.60 50.0 3.26e-01 100.0% 62.3%
4524717 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.58 49.0 4.10e-01 100.0% 56.0%
3173849 101.1.9.77 alpha arrays › HTH › HTH › Putative DNA-binding domain › PAP1 0.57 43.0 4.23e-01 86.8% 78.3%
5026706 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.46e-01 100.0% 47.7%
3614220 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 41.0 3.38e-01 98.1% 76.4%