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NC_054645.1__YP_010053819.1__KGB45_gp54__00054

Bact-Vir

NC_054645.1__YP_010053819.1__KGB45_gp54__00054

Identity

Accession:
NC_054645 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skatevirus› Salmonella_phage_LPST10

TaxID: 1973454

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-72
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l60A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.74 60.0 4.03e-01 89.7% 85.0%
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.73 42.0 3.64e-01 89.7% 38.4%
1o22A00 3.90.1000.10 Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 0.71 51.0 3.78e-01 75.9% 31.5%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.64 50.0 4.23e-01 89.7% 59.8%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.63 56.0 4.90e-01 98.3% 72.9%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.62 52.0 4.75e-01 96.6% 74.1%
2petA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 44.0 3.56e-01 77.6% 49.6%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 40.0 3.31e-01 72.4% 39.0%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 3.72e-01 86.2% 60.0%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 52.0 4.19e-01 98.3% 69.7%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.57 46.0 3.88e-01 91.4% 62.7%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.57 46.0 2.82e-01 89.7% 84.6%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.42e-01 98.3% 75.4%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.57 51.0 3.47e-01 98.3% 34.5%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.56 46.0 3.24e-01 91.4% 89.2%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 44.0 2.71e-01 98.3% 14.7%
4lxqB00 3.40.50.12230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 46.0 2.99e-01 89.7% 29.2%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 38.0 3.59e-01 70.7% 75.4%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.56 44.0 3.79e-01 87.9% 61.1%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.56e-01 94.8% 52.6%
6o1wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 3.03e-01 96.6% 99.6%
4s2rP02 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.55 38.0 2.91e-01 75.9% 47.5%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 3.91e-01 96.6% 78.0%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.54 47.0 3.41e-01 100.0% 75.7%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.74e-01 91.4% 68.0%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.16e-01 93.1% 74.9%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 48.0 3.94e-01 100.0% 74.8%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 44.0 3.41e-01 91.4% 64.8%
3a7sA00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.53 42.0 2.98e-01 91.4% 70.1%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.56e-01 89.7% 69.0%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 45.0 3.09e-01 98.3% 31.9%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 40.0 3.13e-01 86.2% 68.2%
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 41.0 3.81e-01 87.9% 77.0%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.26e-01 94.8% 90.8%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 34.0 3.50e-01 89.7% 72.7%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.79e-01 100.0% 61.4%
1k0eB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.50 39.0 2.44e-01 93.1% 44.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5005470 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.72 59.0 4.97e-01 91.4% 69.0%
3227356 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.71 54.0 3.58e-01 98.3% 21.9%
3502265 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 53.0 3.64e-01 94.8% 26.5%
3619889 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.65 52.0 4.90e-01 87.9% 98.6%
4934281 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 51.0 3.82e-01 96.6% 34.7%
4088180 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.64 55.0 4.87e-01 96.6% 75.3%
3508939 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.63 55.0 4.19e-01 100.0% 42.3%
5028765 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.63 52.0 3.82e-01 98.3% 34.7%
3222917 220.1.1.29 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.63 51.0 3.50e-01 86.2% 48.4%
4057793 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.63 55.0 3.94e-01 96.6% 41.8%
4301684 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.61 53.0 3.74e-01 96.6% 38.3%
3595430 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 49.0 3.38e-01 96.6% 25.5%
3791995 220.1.1.37 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.61 55.0 4.01e-01 100.0% 96.8%
4202176 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.61 53.0 3.69e-01 100.0% 29.5%
5043206 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.61 43.0 3.94e-01 75.9% 61.3%
3474880 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.61 46.0 3.99e-01 81.0% 76.7%
3264278 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 55.0 4.20e-01 100.0% 54.6%
4971247 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.60 48.0 4.39e-01 91.4% 97.5%
3841716 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.60 52.0 3.78e-01 100.0% 36.1%
3250819 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.60 54.0 4.00e-01 100.0% 64.8%
3615220 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 52.0 3.68e-01 96.6% 62.3%
3921879 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 53.0 3.83e-01 100.0% 48.8%
3197429 244.2.1.10 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C 0.59 50.0 3.14e-01 93.1% 60.6%
3706686 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.59 51.0 4.90e-01 96.6% 84.6%
5016434 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 41.0 3.84e-01 75.9% 100.0%
3717837 633.23.1.23 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.58 52.0 3.59e-01 98.3% 63.8%
4934385 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.58 49.0 3.37e-01 93.1% 28.4%
3388895 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.57 51.0 4.06e-01 96.6% 62.7%
3175342 633.23.1.37 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PF29133 0.57 50.0 3.26e-01 100.0% 98.1%
3625596 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 50.0 4.54e-01 100.0% 80.0%
3230955 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 44.0 2.81e-01 82.8% 21.6%
3971508 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.56 43.0 3.04e-01 84.5% 39.5%
3829563 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.56 46.0 3.46e-01 100.0% 58.2%
5028466 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.55 38.0 3.14e-01 75.9% 48.3%
4487335 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.55 48.0 3.10e-01 100.0% 84.0%
5066347 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 49.0 3.58e-01 98.3% 79.3%
3994190 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.55 42.0 2.67e-01 87.9% 29.7%
4995140 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.54 49.0 3.64e-01 100.0% 82.8%
4992470 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.54 48.0 4.76e-01 96.6% 93.3%
4954645 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.54 45.0 3.52e-01 91.4% 73.3%
5063089 2484.1.1.39 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble 0.54 49.0 3.19e-01 100.0% 77.4%
81577 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.54 42.0 2.63e-01 94.8% 47.4%
3437923 12.1.1.87 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › SWIM 0.53 41.0 4.13e-01 91.4% 85.0%
5978 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.53 44.0 3.45e-01 91.4% 67.5%
5072132 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.53 38.0 3.55e-01 81.0% 100.0%
5016314 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.52 45.0 3.40e-01 100.0% 78.0%
1401858 71.1.1.6 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.52 45.0 3.09e-01 98.3% 31.9%
4969727 230.1.1.3 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.52 42.0 3.06e-01 89.7% 55.2%
5022727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.07e-01 87.9% 46.7%
3222321 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 45.0 2.92e-01 98.3% 31.4%
3222575 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 42.0 2.71e-01 89.7% 25.9%
4030804 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.51 44.0 2.83e-01 96.6% 74.8%
4352331 101.1.2.788 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29760 0.51 41.0 3.67e-01 94.8% 68.9%