←Back to structures
NC_054646.1__YP_010053886.1__KGB46_gp34__00034
Bact-VirNC_054646.1__YP_010053886.1__KGB46_gp34__00034
Identity
- Accession:
- NC_054646 ↗
- Kingdom:
- phage
Quality
78.8
mean pLDDT
Taxonomy
TaxID: 2686071
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-91
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v3jA01 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.61 | 43.0 | 3.40e-01 | 75.0% | 84.8% |
| 3tqtB01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 45.0 | 4.07e-01 | 78.4% | 87.4% |
| 2pvpA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 43.0 | 3.89e-01 | 76.1% | 89.1% |
| 3k3pA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 42.0 | 3.98e-01 | 78.4% | 91.0% |
| 1twfI01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 26.0 | 3.39e-01 | 72.7% | 93.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4362740 | 2003.1.10.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N | 0.59 | 44.0 | 3.81e-01 | 80.7% | 91.7% |
| 4024442 | 2488.1.1.7 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 | 0.58 | 44.0 | 3.35e-01 | 85.2% | 92.9% |
| 3607510 | 2488.1.1.7 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 | 0.57 | 45.0 | 3.47e-01 | 89.8% | 85.9% |
| 3609237 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 45.0 | 3.06e-01 | 96.6% | 97.4% |
| None | — | 0.53 | 42.0 | 2.83e-01 | 86.4% | 47.9% | |
| 3394097 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.52 | 34.0 | 3.30e-01 | 72.7% | 58.0% |
| 3902876 | 5.1.3.189 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hyd_WA, Tectonin | 0.52 | 41.0 | 2.89e-01 | 87.5% | 67.4% |