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NC_054648.1__YP_010054104.1__KGB48_gp59__00084

Bact-Vir

NC_054648.1__YP_010054104.1__KGB48_gp59__00084

Identity

Accession:
NC_054648 ↗
Kingdom:
phage

Quality

90.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-41
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24233.2 best DUF7446 26.9 5.10e-06 100.0% 41.4%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 3.57e-01 88.9% 29.2%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.65 48.0 3.39e-01 86.1% 27.2%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.62 45.0 2.86e-01 100.0% 15.7%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 49.0 4.24e-01 100.0% 56.1%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 44.0 3.85e-01 100.0% 50.0%
1uwvA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 44.0 3.20e-01 100.0% 36.5%
1z4vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 44.0 2.56e-01 91.7% 29.1%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.59 41.0 3.03e-01 77.8% 80.6%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 42.0 3.46e-01 100.0% 38.2%
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.58 43.0 3.65e-01 100.0% 86.6%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 46.0 3.62e-01 100.0% 74.4%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 3.59e-01 100.0% 48.3%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 39.0 2.46e-01 88.9% 48.2%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.56 39.0 3.10e-01 77.8% 33.0%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 41.0 2.97e-01 77.8% 51.6%
2v6bC02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.55 44.0 3.09e-01 100.0% 30.2%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 45.0 3.02e-01 100.0% 38.4%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.55 41.0 3.08e-01 97.2% 32.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.54 37.0 2.89e-01 100.0% 28.9%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 40.0 2.88e-01 86.1% 36.0%
3cawA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 40.0 3.30e-01 100.0% 60.4%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 2.91e-01 100.0% 30.8%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.53 38.0 3.40e-01 100.0% 50.0%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.02e-01 100.0% 68.0%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 2.73e-01 88.9% 30.2%
1hyhC02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.53 41.0 2.88e-01 100.0% 28.7%
2p04A00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.52 40.0 3.11e-01 100.0% 32.7%
4ye4H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.00e-01 100.0% 70.6%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.52 36.0 3.52e-01 100.0% 63.0%
2e7zA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.52 40.0 3.64e-01 94.4% 71.9%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 2.78e-01 91.7% 45.4%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.52 37.0 2.66e-01 88.9% 37.3%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.08e-01 100.0% 36.7%
2cg7A02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.51 38.0 3.66e-01 100.0% 70.5%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 43.0 2.68e-01 100.0% 43.0%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 34.0 2.61e-01 91.7% 25.3%
3dohA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 2.54e-01 100.0% 32.5%
3tj4A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 37.0 2.71e-01 100.0% 26.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 55.0 4.63e-01 94.4% 49.2%
5029245 375.1.1.9 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.68 49.0 3.84e-01 100.0% 34.1%
3683115 2.1.1.134 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › GIDE 0.67 51.0 4.03e-01 100.0% 78.0%
5037179 236.3.1.1 beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.64 55.0 4.58e-01 100.0% 70.8%
3444970 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.64 51.0 3.68e-01 100.0% 66.2%
5046188 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 47.0 3.98e-01 97.2% 97.3%
3837953 1.1.7.84 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CzcB_C 0.62 48.0 3.81e-01 94.4% 38.8%
3972556 64.5.1.1 beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB › CON_HrpB 0.59 44.0 4.43e-01 97.2% 88.6%
3247368 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 47.0 3.48e-01 86.1% 35.2%
3623534 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 3.77e-01 100.0% 40.0%
4486974 1.1.7.84 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CzcB_C 0.58 42.0 3.35e-01 91.7% 35.6%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 41.0 3.19e-01 88.9% 40.9%
4034091 4325.1.1.7 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.58 40.0 3.69e-01 75.0% 74.0%
3626173 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 45.0 2.62e-01 100.0% 10.2%
3468988 1.1.5.30 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.57 44.0 2.93e-01 100.0% 47.7%
4927398 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 40.0 2.87e-01 94.4% 29.0%
4948486 1001.1.1.0 a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.56 44.0 4.13e-01 100.0% 70.0%
3342794 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.54 37.0 2.89e-01 72.2% 52.2%
4312097 295.1.1.15 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.53 41.0 2.68e-01 100.0% 18.3%
3505182 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 3.26e-01 94.4% 40.0%
4223216 214.1.1.7 a+b two layers › SH2 › SH2 › SH2 › SH2_1 0.53 41.0 2.84e-01 100.0% 24.6%
3577495 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 38.0 2.57e-01 100.0% 35.3%
2526330 375.15.1.1 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA repair helicase RadD › Zinc finger domain of DNA repair helicase RadD › PF29404 0.52 40.0 3.69e-01 100.0% 62.5%
5027780 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.52 42.0 3.64e-01 100.0% 58.3%
3941378 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 38.0 2.93e-01 100.0% 32.6%
3938498 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.52 38.0 2.90e-01 100.0% 31.6%
4968862 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 38.0 3.62e-01 97.2% 68.9%
5021958 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 38.0 3.55e-01 91.7% 62.0%
3475901 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 42.0 3.25e-01 100.0% 96.7%
2485688 64.5.1.1 beta meanders › WW domain-like › Connector region of RNA helicase HrpB › Connector region of RNA helicase HrpB › CON_HrpB 0.51 38.0 3.84e-01 97.2% 86.1%
4020677 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 42.0 2.91e-01 100.0% 27.4%
3565241 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 2.38e-01 100.0% 8.9%
4967823 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.50 39.0 3.29e-01 100.0% 58.7%
D2 medium residues 43-74
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24233.2 best DUF7446 31.2 2.30e-07 100.0% 45.7%
CATH (68)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 3.50e-01 78.1% 23.5%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 48.0 3.22e-01 100.0% 17.4%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.73 49.0 2.76e-01 100.0% 6.4%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 3.75e-01 100.0% 36.9%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 4.25e-01 100.0% 72.8%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.69 44.0 2.99e-01 96.9% 16.1%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 3.57e-01 90.6% 36.4%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 3.61e-01 90.6% 39.7%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.68 48.0 3.25e-01 78.1% 40.8%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 3.42e-01 87.5% 85.1%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 4.50e-01 100.0% 96.9%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 3.37e-01 84.4% 38.7%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 3.66e-01 87.5% 50.0%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 3.98e-01 100.0% 72.2%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.65 46.0 3.70e-01 78.1% 67.6%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 4.19e-01 100.0% 88.0%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 3.76e-01 100.0% 59.6%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 3.54e-01 87.5% 41.0%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 3.89e-01 93.8% 72.6%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 48.0 3.09e-01 100.0% 19.8%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.63 49.0 2.80e-01 84.4% 38.0%
8amzP01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 53.0 2.97e-01 93.8% 19.2%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 3.72e-01 93.8% 47.8%
5c9iD01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.62 52.0 3.34e-01 100.0% 57.8%
3fvyA03 3.30.70.2600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 52.0 3.90e-01 93.8% 92.0%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 3.48e-01 100.0% 44.9%
1cmjA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.62 53.0 3.00e-01 100.0% 33.3%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 3.83e-01 100.0% 71.3%
4y66F01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.14e-01 100.0% 97.0%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 3.88e-01 96.9% 43.8%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.61 48.0 3.31e-01 96.9% 25.2%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 3.47e-01 100.0% 78.3%
1oyiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.02e-01 96.9% 95.2%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 3.50e-01 93.8% 38.5%
1xb4B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 3.87e-01 100.0% 96.0%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 52.0 3.00e-01 100.0% 13.9%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.56e-01 90.6% 56.4%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 3.69e-01 100.0% 72.5%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 3.59e-01 100.0% 97.9%
3g87A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.59 42.0 3.34e-01 78.1% 85.1%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 3.12e-01 90.6% 77.3%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 3.51e-01 100.0% 64.4%
7bwfD01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.58 41.0 3.85e-01 90.6% 56.2%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 3.55e-01 93.8% 75.3%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 3.76e-01 90.6% 66.7%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 3.40e-01 87.5% 89.6%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 3.76e-01 100.0% 88.0%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 51.0 3.85e-01 100.0% 82.7%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.58 47.0 3.92e-01 96.9% 52.6%
4lq0A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 50.0 3.20e-01 96.9% 23.1%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 3.40e-01 93.8% 92.6%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 50.0 2.76e-01 96.9% 29.9%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 2.93e-01 90.6% 66.4%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.69e-01 93.8% 96.7%
2a6qA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.56 40.0 3.81e-01 90.6% 62.8%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 3.62e-01 100.0% 77.6%
3htuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.70e-01 100.0% 96.0%
3vb0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 46.0 3.10e-01 100.0% 90.7%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.55 47.0 3.47e-01 100.0% 72.9%
6e2gC01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.55 45.0 2.73e-01 96.9% 34.9%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.68e-01 93.8% 98.3%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.54 37.0 2.86e-01 100.0% 50.0%
1qlmA01 3.10.340.11 Alpha Beta › Roll › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 1 › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 1 0.53 38.0 2.86e-01 96.9% 97.5%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.31e-01 100.0% 79.3%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.15e-01 100.0% 79.2%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.27e-01 100.0% 78.0%
2qa4I01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.51 37.0 3.16e-01 96.9% 38.2%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.51 35.0 2.83e-01 75.0% 75.3%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3723153 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.81 51.0 2.79e-01 100.0% 4.7%
3678273 101.1.2.120 alpha arrays › HTH › HTH › winged helix domain › DDRGK 0.75 52.0 3.25e-01 90.6% 14.5%
3819120 101.1.2.120 alpha arrays › HTH › HTH › winged helix domain › DDRGK 0.74 52.0 3.57e-01 90.6% 22.9%
4157268 6102.1.1.1 alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.74 63.0 3.78e-01 100.0% 27.4%
3699952 101.1.2.120 alpha arrays › HTH › HTH › winged helix domain › DDRGK 0.72 51.0 3.34e-01 90.6% 18.5%
3687446 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 4.27e-01 96.9% 68.4%
4274656 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.72 49.0 3.20e-01 71.9% 30.0%
3530824 101.1.2.267 alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.72 53.0 3.97e-01 81.2% 98.8%
5042411 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.72 54.0 3.92e-01 81.2% 58.8%
3795771 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.70 51.0 2.85e-01 100.0% 6.5%
5075143 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.70 54.0 3.31e-01 87.5% 29.8%
4977904 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 4.66e-01 93.8% 98.3%
4950894 101.1.1.195 alpha arrays › HTH › HTH › Three-helical HTH › HTH_5 0.69 53.0 3.30e-01 90.6% 37.0%
4012100 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 3.50e-01 87.5% 94.3%
3930245 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.68 59.0 4.07e-01 100.0% 61.8%
4030596 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 3.70e-01 81.2% 97.6%
4999554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 4.02e-01 96.9% 67.8%
3213954 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.66 50.0 3.14e-01 84.4% 16.8%
4014246 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 2.94e-01 96.9% 9.2%
5016457 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 4.17e-01 100.0% 72.9%
4651301 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.65 53.0 3.72e-01 100.0% 58.3%
4965712 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.65 53.0 3.87e-01 100.0% 65.3%
3931057 558.1.1.0 alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain 0.65 50.0 4.10e-01 100.0% 46.7%
5010437 101.1.2.650 alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.65 53.0 4.46e-01 100.0% 100.0%
5006536 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.65 53.0 3.95e-01 100.0% 67.8%
3589866 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.64 51.0 3.75e-01 90.6% 62.4%
3743565 109.4.1.313 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N 0.64 48.0 2.77e-01 96.9% 8.4%
3481546 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 4.18e-01 96.9% 95.4%
3174392 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.04e-01 100.0% 90.0%
4933311 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.63 48.0 3.10e-01 84.4% 39.3%
5073006 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.63 49.0 3.13e-01 87.5% 20.0%
4941351 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 3.58e-01 87.5% 52.9%
3818050 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.62 50.0 3.74e-01 90.6% 80.0%
3977545 7527.1.1.2 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.62 50.0 2.82e-01 93.8% 7.9%
5069873 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 3.81e-01 100.0% 71.8%
4974545 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 3.70e-01 100.0% 49.1%
3487912 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 3.66e-01 100.0% 68.2%
5049150 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 4.10e-01 96.9% 96.9%
5079941 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.02e-01 100.0% 84.0%
4961047 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.61 50.0 3.80e-01 100.0% 72.9%
5032091 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.61 51.0 3.25e-01 100.0% 66.7%
5053763 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 3.67e-01 93.8% 54.4%
2070315 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.61 51.0 4.03e-01 100.0% 88.9%
3282985 101.1.2.508 alpha arrays › HTH › HTH › winged helix domain › PF25872 0.61 50.0 3.63e-01 90.6% 51.8%
4976552 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.61 51.0 3.88e-01 90.6% 64.3%
4493573 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.61 51.0 3.19e-01 100.0% 34.5%
4237263 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.60 52.0 3.59e-01 100.0% 97.5%
4970833 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.60 49.0 3.75e-01 100.0% 41.4%
5057657 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 3.43e-01 96.9% 52.2%
4032391 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.60 50.0 3.76e-01 100.0% 72.9%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.60 52.0 3.54e-01 100.0% 46.1%
5072417 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 3.32e-01 93.8% 54.2%
3577491 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.59 49.0 3.50e-01 100.0% 41.0%
3292448 4964.1.1.2 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.59 49.0 2.92e-01 100.0% 13.7%
3429600 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.59 51.0 3.40e-01 100.0% 37.7%
5037761 7528.1.1.0 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.59 50.0 3.08e-01 93.8% 64.6%
1040605 101.1.2.77 alpha arrays › HTH › HTH › winged helix domain › ESCRT-II 0.59 49.0 3.89e-01 100.0% 97.3%
4400545 3433.1.2.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.59 47.0 3.94e-01 87.5% 94.3%
4975589 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.49e-01 87.5% 50.7%
4972761 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 50.0 3.02e-01 100.0% 24.4%
4979355 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 3.08e-01 100.0% 25.5%
5073398 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.58 51.0 3.28e-01 100.0% 72.0%
3945508 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.57 47.0 2.99e-01 100.0% 92.5%
3721713 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 50.0 3.91e-01 100.0% 77.1%
5067176 2004.1.1.66 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 0.57 48.0 2.96e-01 100.0% 17.6%
3588023 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.57 48.0 3.70e-01 100.0% 77.5%
4033043 616.1.1.41 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 0.57 49.0 3.65e-01 100.0% 41.1%
167429 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.57 45.0 2.93e-01 90.6% 66.4%
3687407 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.57 47.0 3.74e-01 96.9% 98.6%
4940198 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 48.0 3.28e-01 100.0% 34.2%
3714022 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.56 43.0 3.57e-01 84.4% 96.7%
3804348 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.56 49.0 3.59e-01 100.0% 47.1%
4945161 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.56 47.0 2.96e-01 100.0% 53.7%
3679276 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.56 51.0 3.99e-01 100.0% 60.3%
5052340 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 50.0 3.84e-01 100.0% 98.6%
3171587 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.56 47.0 2.61e-01 96.9% 8.0%
4968136 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.56 49.0 3.12e-01 100.0% 55.6%
3315108 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.56 46.0 3.33e-01 100.0% 71.8%
3782381 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.55 49.0 3.30e-01 100.0% 68.0%
3661638 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.55 48.0 3.43e-01 100.0% 43.2%
4995778 101.1.2.368 alpha arrays › HTH › HTH › winged helix domain › HTH_36 0.55 46.0 3.49e-01 100.0% 76.5%
5082110 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 49.0 3.88e-01 100.0% 51.7%
3782612 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 39.0 2.68e-01 93.8% 60.6%
3478227 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 49.0 3.71e-01 100.0% 45.7%
4935553 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 48.0 2.99e-01 100.0% 20.0%
4984847 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.53 48.0 3.71e-01 100.0% 50.8%
3246176 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 48.0 3.55e-01 100.0% 44.0%
4937983 101.1.2.139 alpha arrays › HTH › HTH › winged helix domain › HTH_23 0.53 47.0 3.21e-01 100.0% 30.5%
135163 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.52 42.0 2.89e-01 100.0% 48.1%
4029491 3781.1.1.0 a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain 0.51 46.0 3.91e-01 100.0% 68.0%
3397502 4012.4.1.0 a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.50 45.0 4.19e-01 100.0% 80.0%