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NC_054655.1__YP_010054587.1__KGG70_gp58__00022

Bact-Vir

NC_054655.1__YP_010054587.1__KGG70_gp58__00022

Identity

Accession:
NC_054655 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 179-369
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hwjA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.71 52.0 5.88e-01 99.0% 96.6%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.71 38.0 5.00e-01 96.3% 94.2%
1nqjB00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.70 37.0 4.70e-01 96.3% 85.1%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.69 38.0 4.78e-01 100.0% 87.2%
3j4uH00 2.60.120.1110 Mainly Beta › Sandwich › Jelly Rolls › 0.64 41.0 4.72e-01 100.0% 87.9%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 43.0 4.92e-01 98.4% 97.8%
1sppB00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.60 33.0 4.09e-01 96.3% 86.6%
1w0nA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 38.0 4.59e-01 100.0% 98.3%
2wz8A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 41.0 4.79e-01 100.0% 98.5%
4jx0A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 41.0 4.64e-01 99.0% 92.3%
7wqxA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.59 33.0 4.18e-01 96.9% 96.2%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 39.0 4.56e-01 99.0% 95.6%
2w3jA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 41.0 4.75e-01 92.7% 100.0%
1gnyA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 43.0 4.72e-01 100.0% 96.1%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 40.0 4.65e-01 100.0% 98.5%
1kv3A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 34.0 4.26e-01 89.5% 95.7%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 42.0 4.65e-01 99.5% 95.4%
6a48A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 41.0 4.64e-01 96.9% 99.3%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.57 37.0 4.36e-01 100.0% 96.1%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 4.82e-01 100.0% 95.3%
2okxA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 42.0 4.45e-01 97.4% 88.7%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 40.0 4.53e-01 100.0% 97.3%
2q1fA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.55 42.0 4.46e-01 99.5% 89.8%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.55 38.0 4.40e-01 90.1% 98.5%
3demA03 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.55 31.0 3.80e-01 96.9% 89.5%
3w5nA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 43.0 4.54e-01 97.9% 93.4%
6m9sD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 25.0 3.40e-01 76.4% 82.2%
2qqkA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.54 31.0 3.78e-01 96.9% 88.9%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 40.0 4.41e-01 96.9% 95.5%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 35.0 4.08e-01 97.4% 93.9%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 4.53e-01 100.0% 95.7%
4zelB01 2.60.120.310 Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain 0.53 37.0 4.15e-01 100.0% 92.4%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 4.46e-01 100.0% 98.7%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 31.0 3.73e-01 100.0% 90.0%
1tg7A05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 4.00e-01 89.5% 81.8%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 30.0 3.68e-01 82.2% 88.4%
6mkbA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 4.24e-01 97.4% 92.5%
1o59A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 4.30e-01 100.0% 90.4%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 4.32e-01 96.9% 95.7%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.48e-01 78.0% 78.3%
3iiiA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 44.0 4.51e-01 100.0% 96.7%
7u6iA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 36.0 3.41e-01 96.3% 58.3%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.51 29.0 3.59e-01 100.0% 92.8%
4lr4A02 2.60.120.1430 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 4.11e-01 100.0% 89.9%
6r3mA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.50 41.0 4.33e-01 99.5% 97.0%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 4.03e-01 95.3% 94.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060903 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.77 58.0 6.48e-01 99.0% 98.0%
4952405 10.1.2.194 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › Lectin_like 0.75 38.0 5.36e-01 70.2% 98.9%
4995808 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.75 59.0 6.42e-01 100.0% 97.5%
5037351 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.73 55.0 6.12e-01 96.9% 97.3%
4932670 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 36.0 4.93e-01 84.8% 96.8%
4974487 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 59.0 6.24e-01 98.4% 97.6%
4944854 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.70 57.0 5.99e-01 98.4% 93.7%
5051002 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.70 55.0 5.94e-01 100.0% 97.5%
2706546 10.32.1.16 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Clenterotox 0.69 38.0 4.51e-01 100.0% 76.1%
3341432 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.69 37.0 4.17e-01 99.0% 66.9%
5021919 10.1.2.194 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › Lectin_like 0.69 57.0 6.03e-01 100.0% 97.1%
3642389 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.69 36.0 4.79e-01 91.6% 92.4%
3606028 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.68 40.0 5.00e-01 99.0% 93.2%
3825274 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.67 36.0 3.92e-01 100.0% 60.0%
4944751 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 39.0 4.77e-01 97.4% 90.8%
4970162 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 54.0 5.81e-01 98.4% 98.8%
4944076 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 40.0 4.88e-01 100.0% 95.0%
5034749 10.1.2.194 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › Lectin_like 0.65 54.0 5.77e-01 99.5% 98.8%
5082908 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 36.0 4.66e-01 100.0% 96.3%
3519987 11.1.1.161 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TPPII 0.64 40.0 4.97e-01 100.0% 99.2%
4955347 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 36.0 4.65e-01 86.9% 99.0%
5034239 10.1.2.200 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF7901 0.63 59.0 5.87e-01 100.0% 97.4%
5043233 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 35.0 4.57e-01 94.8% 100.0%
4127135 10.32.1.12 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.63 44.0 4.89e-01 98.4% 88.4%
3824427 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 39.0 2.96e-01 100.0% 26.2%
5044223 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 33.0 4.50e-01 86.9% 98.0%
5014883 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 37.0 4.50e-01 98.4% 92.5%
5083101 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 37.0 4.54e-01 99.5% 93.3%
3580968 10.40.1.1 beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.62 50.0 5.41e-01 100.0% 97.6%
159821 10.32.1.12 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.61 43.0 4.92e-01 98.4% 97.8%
5039141 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.61 44.0 4.90e-01 98.4% 94.0%
3622545 10.40.1.1 beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.61 49.0 5.33e-01 84.3% 98.8%
3358387 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 36.0 4.56e-01 88.0% 97.4%
4426314 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 44.0 5.00e-01 100.0% 99.3%
1393372 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 41.0 4.36e-01 99.0% 80.4%
4963683 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 38.0 4.33e-01 100.0% 85.5%
3748555 10.32.1.216 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.59 35.0 4.39e-01 93.7% 97.4%
4963502 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 37.0 4.30e-01 96.3% 88.1%
4029586 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.58 43.0 4.83e-01 100.0% 97.3%
4887934 10.3.1.8 beta sandwiches › jelly-roll › TNF-like › TNF-like › Bc2l-C_N 0.57 39.0 4.45e-01 100.0% 94.2%
3691986 10.32.1.246 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PalB_C 0.57 44.0 4.90e-01 94.2% 98.7%
140303 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.57 42.0 4.65e-01 99.5% 96.1%
1176686 10.32.1.77 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Reelin_subrepeat-B 0.55 40.0 4.48e-01 96.9% 97.3%
4273934 11.1.5.25 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › ChiC 0.55 35.0 3.89e-01 100.0% 80.7%
5039250 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.54 45.0 4.74e-01 99.5% 97.7%
1286922 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 42.0 4.50e-01 99.5% 96.9%
3268226 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.53 26.0 3.42e-01 99.0% 83.8%
5034152 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.53 39.0 4.32e-01 86.9% 95.3%
4538814 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 26.0 3.36e-01 99.0% 83.8%
2126901 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 45.0 4.16e-01 99.5% 74.4%
3262846 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 47.0 4.75e-01 100.0% 96.4%
3480988 10.2.1.18 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monooxygen 0.51 36.0 4.10e-01 100.0% 96.4%
4584441 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 26.0 3.35e-01 99.0% 85.4%
4356983 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 26.0 3.26e-01 99.0% 80.0%
3445388 5001.1.1.23 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › GOST_TM 0.51 41.0 3.13e-01 83.2% 91.3%
4020405 10.32.1.17 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Allantoicase 0.51 41.0 4.20e-01 100.0% 86.8%
4209070 10.32.1.31 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.51 45.0 4.57e-01 98.4% 96.8%
3707311 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.50 42.0 3.91e-01 88.0% 99.1%
3211451 10.32.1.172 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DDR1-2_DS-like 0.50 41.0 4.41e-01 97.4% 100.0%