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NC_054655.1__YP_010054596.1__KGG70_gp49__00031

Bact-Vir

NC_054655.1__YP_010054596.1__KGG70_gp49__00031

Identity

Accession:
NC_054655 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-78
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.67 57.0 4.12e-01 100.0% 72.7%
4v19J00 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.62 45.0 3.41e-01 77.9% 38.1%
1vi7A01 3.30.230.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain 0.60 49.0 4.06e-01 94.1% 71.9%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.58 47.0 4.59e-01 100.0% 81.0%
5ajiB03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 3.73e-01 76.5% 56.8%
4binA01 2.60.40.3500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 4.07e-01 94.1% 94.0%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 45.0 3.46e-01 88.2% 40.9%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 49.0 3.93e-01 100.0% 83.1%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 39.0 3.75e-01 76.5% 62.5%
1xviA02 3.30.980.20 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 0.56 49.0 4.42e-01 100.0% 84.0%
1lehA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 47.0 3.72e-01 100.0% 87.4%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 45.0 3.35e-01 100.0% 80.7%
1bxgA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 47.0 3.85e-01 100.0% 83.7%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 44.0 3.27e-01 100.0% 32.0%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 45.0 4.13e-01 100.0% 73.7%
2qmwA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 41.0 4.00e-01 91.2% 75.3%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 45.0 4.16e-01 98.5% 73.3%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.61e-01 73.5% 93.4%
2fe0A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 46.0 4.04e-01 100.0% 72.0%
7ewsB02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.53 44.0 3.00e-01 92.6% 27.5%
3v6oB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.95e-01 94.1% 67.0%
5zynB01 3.90.700.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 0.53 43.0 3.52e-01 100.0% 83.2%
1p50A02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.53 41.0 2.91e-01 91.2% 44.6%
1jllB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 38.0 3.06e-01 80.9% 83.9%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 41.0 3.81e-01 88.2% 71.9%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 40.0 2.98e-01 83.8% 64.0%
2di8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.76e-01 97.1% 66.0%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.80e-01 92.6% 69.3%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 46.0 4.26e-01 100.0% 79.5%
1orvA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 3.02e-01 100.0% 98.1%
6k3lB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 45.0 4.15e-01 100.0% 76.9%
2qmlA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 42.0 3.20e-01 100.0% 57.0%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 45.0 4.24e-01 100.0% 86.7%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.51 37.0 3.49e-01 89.7% 62.4%
3lltA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 43.0 3.92e-01 97.1% 98.9%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 44.0 4.06e-01 100.0% 79.5%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 37.0 3.57e-01 85.3% 73.3%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5013279 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.72 61.0 5.98e-01 100.0% 86.7%
5013284 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.69 59.0 5.77e-01 100.0% 88.0%
4679680 312.1.1.12 a+b three layers › HIT-like › HIT-related › HIT-related › DUF4931_C 0.62 53.0 4.68e-01 100.0% 82.9%
3382396 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 48.0 4.52e-01 92.6% 70.6%
4025870 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 54.0 5.22e-01 100.0% 92.0%
3364258 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.60 47.0 4.36e-01 92.6% 68.2%
3218711 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.60 48.0 4.22e-01 91.2% 60.0%
4941686 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.60 42.0 4.25e-01 76.5% 74.3%
3385565 320.1.1.16 a+b two layers › R3H domain-like › R3H domain › R3H domain › HP0268 0.59 49.0 4.69e-01 91.2% 100.0%
3701635 3696.1.1.0 a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.59 42.0 3.80e-01 91.2% 54.7%
3306325 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.58 47.0 4.33e-01 94.1% 67.8%
3817811 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 48.0 4.54e-01 98.5% 75.3%
5032320 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.58 45.0 4.20e-01 100.0% 68.2%
5041860 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.58 47.0 3.31e-01 100.0% 27.6%
3462522 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 45.0 3.77e-01 92.6% 48.8%
4961351 242.1.1.10 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › PF26411 0.56 46.0 4.06e-01 100.0% 59.1%
4447510 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.56 45.0 3.61e-01 94.1% 42.0%
4583308 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 45.0 3.46e-01 92.6% 36.5%
4977841 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.56 47.0 4.55e-01 100.0% 88.7%
3736236 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 46.0 3.44e-01 98.5% 37.5%
4010459 310.3.1.4 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C 0.56 46.0 3.96e-01 98.5% 55.8%
4274665 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.56 46.0 4.07e-01 95.6% 61.2%
4098064 304.8.1.65 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT, PF27446 0.56 44.0 3.38e-01 92.6% 35.4%
4298844 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 45.0 4.12e-01 95.6% 66.3%
3367405 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.55 45.0 3.94e-01 92.6% 58.2%
4928076 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.55 47.0 4.46e-01 100.0% 94.0%
3405771 321.1.1.3 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › ATP-gua_Ptrans 0.55 43.0 3.03e-01 91.2% 44.2%
4494422 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.55 44.0 3.51e-01 94.1% 41.3%
4292806 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 46.0 4.01e-01 95.6% 61.0%
3965787 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.55 43.0 3.44e-01 91.2% 40.7%
4354854 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 44.0 3.43e-01 94.1% 38.2%
4194812 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.55 45.0 3.81e-01 94.1% 52.5%
3384789 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.54 46.0 4.06e-01 100.0% 74.5%
4382507 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 45.0 3.52e-01 98.5% 40.0%
4247396 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.54 43.0 3.34e-01 92.6% 36.5%
4043221 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 45.0 3.95e-01 98.5% 60.0%
3368757 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.54 45.0 4.05e-01 95.6% 66.3%
3833138 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.54 46.0 3.51e-01 100.0% 98.3%
4390550 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.54 44.0 3.86e-01 92.6% 59.0%
4473190 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.54 45.0 3.39e-01 95.6% 36.6%
3603235 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.54 43.0 3.89e-01 100.0% 63.0%
3602910 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.54 42.0 3.93e-01 100.0% 68.9%
4030911 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.54 42.0 4.00e-01 88.2% 72.6%
4500983 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.54 45.0 3.46e-01 95.6% 40.0%
4236566 304.8.1.65 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT, PF27446 0.53 44.0 3.63e-01 94.1% 48.5%
4248471 304.8.1.57 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.53 42.0 3.93e-01 94.1% 68.9%
4656385 304.8.1.47 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd 0.53 42.0 3.97e-01 92.6% 70.6%
3341034 304.8.1.57 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.53 43.0 3.81e-01 94.1% 59.1%
4234924 304.8.1.57 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.53 42.0 3.82e-01 94.1% 62.0%
4549948 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.53 43.0 3.69e-01 94.1% 52.5%
4545902 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 43.0 4.02e-01 95.6% 71.1%
4515771 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.53 43.0 3.85e-01 95.6% 63.0%
4225320 306.3.1.4 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › PFF1_C 0.53 41.0 3.73e-01 95.6% 60.0%
3377982 304.8.1.57 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.53 41.0 3.79e-01 88.2% 64.4%
4943292 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.53 41.0 3.86e-01 100.0% 68.9%
4413612 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 43.0 3.76e-01 100.0% 60.0%
3599428 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 45.0 2.96e-01 100.0% 21.8%
4592207 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 44.0 3.52e-01 95.6% 44.8%
2811276 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 45.0 3.55e-01 100.0% 71.1%
3602169 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 41.0 3.84e-01 100.0% 68.2%
4450775 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.52 43.0 3.82e-01 95.6% 61.5%
4398167 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.52 43.0 4.01e-01 95.6% 72.7%
4238391 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 44.0 3.76e-01 95.6% 56.5%
4500602 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 43.0 3.91e-01 95.6% 67.4%
4993850 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 42.0 3.90e-01 100.0% 68.4%
4958905 241.5.1.2 a+b two layers › Type III secretory system chaperone-like › DNA-binding C-terminal domain of the transcription factor MotA › DNA-binding C-terminal domain of the transcription factor MotA › DUF1529 0.52 45.0 3.83e-01 100.0% 68.9%
1786499 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 41.0 3.42e-01 88.2% 52.0%
3665392 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 45.0 3.80e-01 100.0% 77.5%
3667551 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 44.0 4.08e-01 100.0% 87.8%
3629867 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 46.0 2.96e-01 100.0% 21.2%
4409327 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.52 43.0 3.77e-01 95.6% 61.0%
4138832 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.52 43.0 3.97e-01 95.6% 71.9%
3671608 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 42.0 3.69e-01 97.1% 58.2%
3441274 304.8.1.47 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd 0.52 45.0 3.75e-01 100.0% 60.0%
4410723 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.52 42.0 3.83e-01 100.0% 66.7%
3376396 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.51 43.0 2.52e-01 100.0% 59.2%
3233366 209.1.1.14 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 0.51 43.0 3.36e-01 100.0% 83.4%
None 0.51 42.0 2.80e-01 100.0% 20.0%
3959682 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 43.0 4.22e-01 98.5% 89.3%
3641833 304.8.1.57 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.51 41.0 3.44e-01 88.2% 54.2%
3650337 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.51 43.0 3.53e-01 97.1% 53.1%
3303209 10.32.1.198 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.51 44.0 3.29e-01 100.0% 66.8%
3217091 209.1.1.14 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 0.51 41.0 3.17e-01 98.5% 92.1%