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NC_054667.1__YP_010055584.1__KGG87_gp51__00051

Bact-Vir

NC_054667.1__YP_010055584.1__KGG87_gp51__00051

Identity

Accession:
NC_054667 ↗
Kingdom:
phage

Quality

76.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Caelumvirus› Streptomyces_phage_Issmi

TaxID: 2725628

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-77
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 56.0 6.14e-01 73.5% 100.0%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.78 56.0 6.18e-01 75.0% 100.0%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 62.0 6.08e-01 85.3% 86.3%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 52.0 5.11e-01 72.1% 91.9%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 62.0 5.92e-01 89.7% 76.2%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 53.0 5.31e-01 76.5% 95.7%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 5.12e-01 75.0% 91.5%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 50.0 4.90e-01 73.5% 86.7%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 5.42e-01 95.6% 68.0%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 64.0 5.53e-01 100.0% 68.3%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.71 59.0 5.69e-01 91.2% 87.0%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.70 59.0 4.43e-01 92.6% 96.4%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 5.19e-01 76.5% 91.7%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 46.0 4.65e-01 70.6% 98.5%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.54e-01 73.5% 96.1%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 5.15e-01 75.0% 100.0%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 45.0 4.38e-01 70.6% 92.0%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.66 51.0 4.96e-01 82.4% 100.0%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.61 44.0 3.35e-01 77.9% 45.4%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.59 50.0 4.90e-01 94.1% 91.8%
4oj5B01 3.30.2020.50 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.59 40.0 3.77e-01 70.6% 68.3%
2y8nB02 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 34.0 3.88e-01 88.2% 88.6%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 43.0 4.31e-01 83.8% 100.0%
2a5zA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.00e-01 89.7% 58.2%
3wa1A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 36.0 2.82e-01 72.1% 98.8%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.52 40.0 3.59e-01 88.2% 95.1%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 35.0 3.31e-01 70.6% 67.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4169657 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.83 56.0 6.45e-01 70.6% 98.0%
3638396 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.82 56.0 5.96e-01 70.6% 100.0%
4665407 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.82 58.0 6.62e-01 77.9% 100.0%
279006 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 55.0 5.52e-01 70.6% 92.8%
3256498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 57.0 6.21e-01 73.5% 100.0%
3340900 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 63.0 6.47e-01 82.4% 89.2%
4252943 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.79 56.0 6.37e-01 73.5% 100.0%
3502388 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 57.0 5.52e-01 75.0% 73.3%
4583465 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.79 56.0 6.34e-01 73.5% 100.0%
4266110 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.79 60.0 5.94e-01 79.4% 87.1%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.79 58.0 6.41e-01 83.8% 96.4%
3511551 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 56.0 5.94e-01 75.0% 100.0%
3347851 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 57.0 5.68e-01 77.9% 74.3%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.78 59.0 5.74e-01 79.4% 87.7%
3496659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 60.0 6.40e-01 82.4% 100.0%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.78 57.0 6.32e-01 77.9% 96.4%
3463181 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 60.0 5.99e-01 82.4% 85.7%
4516378 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.77 57.0 5.71e-01 77.9% 75.7%
3883165 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 64.0 5.55e-01 89.7% 64.0%
3828348 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 59.0 6.08e-01 82.4% 90.8%
3465976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 59.0 6.04e-01 82.4% 87.7%
3393360 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 62.0 5.20e-01 89.7% 53.9%
3631186 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.75 55.0 5.46e-01 76.5% 92.9%
3768095 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 65.0 5.76e-01 94.1% 70.5%
3507338 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 57.0 6.09e-01 80.9% 95.0%
3622137 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 65.0 5.94e-01 95.6% 74.4%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.75 54.0 5.94e-01 77.9% 94.5%
3407853 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 65.0 5.90e-01 97.1% 72.2%
3407820 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 65.0 6.05e-01 100.0% 76.5%
3774108 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 65.0 5.78e-01 97.1% 68.4%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 58.0 5.64e-01 83.8% 82.7%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 53.0 5.84e-01 77.9% 94.5%
3264806 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 51.0 5.73e-01 72.1% 100.0%
3429682 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 56.0 5.49e-01 82.4% 74.7%
4009688 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.73 57.0 5.87e-01 83.8% 87.7%
3569639 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 52.0 4.90e-01 75.0% 80.0%
3338134 4.1.1.155 ↗ beta barrels › SH3 › SH3 › SH3 › CRR42-like 0.72 55.0 5.35e-01 80.9% 100.0%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.72 60.0 5.23e-01 89.7% 63.0%
3188732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 50.0 4.84e-01 72.1% 86.7%
3877938 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 63.0 5.71e-01 95.6% 72.2%
4027625 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 49.0 5.45e-01 70.6% 100.0%
3407827 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 63.0 5.83e-01 97.1% 77.6%
1405101 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.71 49.0 5.57e-01 72.1% 100.0%
3736190 4.1.1.302 ↗ beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.71 58.0 3.45e-01 89.7% 63.4%
3263489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.01e-01 72.1% 100.0%
3535424 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 48.0 4.79e-01 70.6% 91.4%
4627221 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.70 52.0 5.35e-01 79.4% 84.6%
5038074 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.70 49.0 3.43e-01 75.0% 62.1%
3230113 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.69 60.0 3.71e-01 97.1% 52.7%
3696171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 57.0 3.53e-01 92.6% 49.4%
3941320 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.67 58.0 5.61e-01 94.1% 97.3%
3700174 4.18.1.0 ↗ beta barrels › SH3 › Plus3 › Plus3 0.67 60.0 4.89e-01 100.0% 67.2%
3348231 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.24e-01 85.3% 98.6%
3243256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 4.11e-01 91.2% 53.7%
4019925 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 49.0 4.93e-01 79.4% 95.7%
4245466 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.66 45.0 5.02e-01 77.9% 98.0%
3267416 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 51.0 4.84e-01 85.3% 86.3%
3554994 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 47.0 4.40e-01 79.4% 84.3%
3920103 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 49.0 4.52e-01 83.8% 83.3%
3333152 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.63 55.0 5.20e-01 95.6% 96.2%
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.76e-01 79.4% 95.4%
4943228 1.1.7.146 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_Xtn 0.61 44.0 4.49e-01 76.5% 100.0%
2448699 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 42.0 4.25e-01 77.9% 97.1%
4407497 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 42.0 4.32e-01 77.9% 100.0%
3515688 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.30e-01 77.9% 65.0%
3578905 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.53 37.0 3.47e-01 75.0% 78.9%
5009939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.16e-01 75.0% 82.9%