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NC_054714.1__YP_010056826.1__KHO57_gp207__00122

Bact-Vir

NC_054714.1__YP_010056826.1__KHO57_gp207__00122

Identity

Accession:
NC_054714 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myrnavirus› Mycobacterium_phage_Phabba

TaxID: 2027899

Cluster

View cluster (241 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-155
PDB
Domain cluster: rep: OM634661.1__UNY39883.1__KLEB273_gp028__00028__D30-53_67-102_115-232
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 32.0 4.24e-01 92.3% 79.5%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.67 57.0 5.51e-01 100.0% 81.4%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 30.0 3.53e-01 78.9% 62.5%
3ne5C02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 37.0 4.26e-01 95.1% 81.4%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 46.0 5.06e-01 100.0% 94.9%
8cwoF01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.60 31.0 3.77e-01 85.9% 76.7%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 42.0 4.28e-01 100.0% 73.9%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.57 33.0 3.62e-01 97.2% 69.0%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 4.28e-01 100.0% 84.1%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.56 45.0 4.67e-01 98.6% 89.7%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 42.0 4.30e-01 100.0% 81.6%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 43.0 4.39e-01 100.0% 85.4%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.54 47.0 4.54e-01 97.2% 84.6%
6y43A01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.52 35.0 3.48e-01 97.9% 64.6%
4kc3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 25.0 3.01e-01 81.0% 66.3%
2g1lA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 24.0 2.80e-01 100.0% 59.2%
1lwuC01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.50 35.0 3.45e-01 97.9% 65.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4140243 1.1.5.82 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 0.84 61.0 6.75e-01 100.0% 92.2%
2471641 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.81 70.0 6.91e-01 100.0% 86.6%
5003885 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.81 70.0 6.96e-01 100.0% 89.0%
2471637 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.79 72.0 7.09e-01 100.0% 91.3%
2832217 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.79 69.0 6.94e-01 100.0% 92.3%
3976188 1.1.13.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.78 67.0 6.36e-01 100.0% 77.6%
4157825 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 65.0 6.75e-01 100.0% 95.4%
3581358 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 70.0 6.80e-01 100.0% 89.0%
2832216 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.76 72.0 6.98e-01 100.0% 92.2%
3023894 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.76 69.0 6.86e-01 100.0% 92.6%
3942090 1.1.5.77 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube 0.76 65.0 6.18e-01 100.0% 77.6%
4995819 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.76 71.0 7.03e-01 100.0% 97.3%
2101663 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.75 70.0 6.67e-01 99.3% 87.7%
3096576 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.74 67.0 6.44e-01 100.0% 86.2%
5078836 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 54.0 6.09e-01 100.0% 98.2%
4988100 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 60.0 6.39e-01 100.0% 99.2%
5004308 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 65.0 6.29e-01 100.0% 91.6%
4995820 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 59.0 6.15e-01 100.0% 98.5%
184986 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.67 54.0 5.80e-01 99.3% 98.4%
4033579 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.66 55.0 5.88e-01 96.5% 100.0%
3059162 1.1.13.30 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.65 52.0 5.51e-01 97.2% 95.2%
4034209 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.64 57.0 5.85e-01 97.9% 100.0%
4032554 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 56.0 5.30e-01 100.0% 81.8%
3281573 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.62 43.0 4.48e-01 100.0% 74.8%
3943681 1.1.13.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.62 57.0 5.61e-01 97.9% 97.3%
5062396 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 55.0 5.53e-01 94.4% 97.9%
4009489 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.61 53.0 5.22e-01 100.0% 87.1%
3589778 1.1.5.78 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_TTP_1 0.60 56.0 5.23e-01 100.0% 86.5%
3385776 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 44.0 4.51e-01 100.0% 79.3%
5059262 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 30.0 3.42e-01 81.7% 64.5%
4926888 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 45.0 4.68e-01 100.0% 88.5%
5041349 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 28.0 3.31e-01 93.0% 66.0%
3575301 11.1.1.591 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig7 0.55 27.0 3.14e-01 80.3% 64.0%
3166912 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 34.0 3.09e-01 85.9% 45.3%
3966645 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.54 43.0 4.56e-01 97.2% 94.4%
4998991 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.53 44.0 4.49e-01 100.0% 89.3%
4000485 319.1.1.20 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SF3A2 0.53 34.0 3.84e-01 91.5% 83.6%
4027705 1.1.7.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Aquarius_N_2nd 0.53 45.0 4.54e-01 100.0% 89.7%
3811908 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.50 31.0 3.12e-01 96.5% 60.0%