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NC_054714.1__YP_010056904.1__KHO57_gp129__00200

Bact-Vir

NC_054714.1__YP_010056904.1__KHO57_gp129__00200

Identity

Accession:
NC_054714 ↗
Kingdom:
phage

Quality

77.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myrnavirus› Mycobacterium_phage_Phabba

TaxID: 2027899

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-90
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.80 61.0 4.83e-01 80.3% 54.1%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.79 71.0 4.94e-01 98.7% 38.5%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.78 71.0 5.56e-01 98.7% 60.9%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.77 70.0 5.59e-01 100.0% 62.8%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.77 66.0 5.65e-01 93.4% 72.3%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.77 68.0 4.97e-01 97.4% 58.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 53.0 5.51e-01 78.9% 77.5%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.76 70.0 5.51e-01 100.0% 64.7%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 6.24e-01 93.4% 96.8%
3ptaA03 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.76 70.0 5.27e-01 100.0% 51.2%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.76 55.0 6.15e-01 93.4% 100.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 5.43e-01 80.3% 76.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 6.24e-01 89.5% 98.4%
4dovA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.76 69.0 5.37e-01 100.0% 66.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 6.08e-01 88.2% 83.7%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.74 68.0 5.43e-01 100.0% 64.1%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 59.0 5.49e-01 92.1% 70.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 53.0 5.70e-01 76.3% 98.4%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 50.0 5.41e-01 71.1% 88.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 5.66e-01 76.3% 91.9%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 60.0 3.84e-01 98.7% 57.6%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.70e-01 100.0% 93.2%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 5.93e-01 90.8% 100.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 5.34e-01 92.1% 98.4%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.65 54.0 5.27e-01 90.8% 90.4%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 4.77e-01 94.7% 73.3%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 56.0 4.63e-01 100.0% 93.6%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 55.0 4.25e-01 100.0% 96.5%
6ei1A01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 55.0 3.83e-01 100.0% 81.6%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.61 50.0 4.74e-01 92.1% 79.6%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 50.0 4.46e-01 94.7% 82.6%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 42.0 3.26e-01 77.6% 88.6%
2a6hC05 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 30.0 3.08e-01 84.2% 50.7%
1hcdA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 44.0 3.91e-01 89.5% 86.4%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 41.0 2.82e-01 84.2% 33.7%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.53 44.0 2.70e-01 93.4% 59.1%
4jp0A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.54e-01 92.1% 85.2%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.57e-01 86.8% 85.4%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 44.0 3.51e-01 93.4% 87.3%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 40.0 2.72e-01 84.2% 41.0%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 60.0 6.42e-01 78.9% 83.1%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 60.0 6.64e-01 88.2% 95.0%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 61.0 6.58e-01 93.4% 93.8%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 56.0 6.39e-01 78.9% 98.2%
3497989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 55.0 6.11e-01 77.6% 90.0%
3188023 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.80 74.0 5.19e-01 100.0% 40.9%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 59.0 6.18e-01 92.1% 84.3%
3670066 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.80 65.0 5.06e-01 86.8% 54.2%
3173893 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.80 74.0 5.01e-01 100.0% 36.7%
3503439 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.80 73.0 5.64e-01 100.0% 55.6%
3444064 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.79 72.0 5.26e-01 100.0% 44.1%
3507146 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 61.0 5.85e-01 88.2% 72.9%
4001653 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.79 72.0 5.37e-01 100.0% 50.0%
3491615 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.79 61.0 4.19e-01 93.4% 25.2%
3495447 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.79 61.0 5.21e-01 93.4% 52.5%
3521904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 73.0 6.69e-01 100.0% 91.6%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 59.0 5.05e-01 85.5% 50.8%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.78 55.0 5.97e-01 81.6% 87.5%
3575867 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.78 72.0 5.80e-01 100.0% 66.7%
3422227 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.78 71.0 4.65e-01 100.0% 28.1%
3474784 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.78 71.0 5.35e-01 100.0% 62.3%
3334435 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.78 71.0 5.55e-01 100.0% 63.2%
3460287 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.77 71.0 5.47e-01 100.0% 56.2%
2672307 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.77 70.0 5.48e-01 100.0% 57.7%
4094583 101.33.1.3 ↗ alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain › BAH 0.77 70.0 4.54e-01 100.0% 27.4%
3242335 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.77 70.0 5.12e-01 100.0% 46.7%
3819710 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.77 71.0 5.10e-01 100.0% 44.5%
3550047 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.77 61.0 4.61e-01 84.2% 58.2%
3330137 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.77 70.0 5.43e-01 100.0% 56.2%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 63.0 3.57e-01 89.5% 9.5%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 61.0 5.68e-01 88.2% 68.4%
3454181 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.76 70.0 5.21e-01 100.0% 52.8%
3823515 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.76 70.0 5.45e-01 100.0% 58.1%
3629455 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.76 70.0 5.13e-01 100.0% 56.8%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 61.0 6.37e-01 86.8% 95.7%
3935716 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.76 62.0 6.24e-01 86.8% 90.7%
3313137 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.76 70.0 5.38e-01 100.0% 55.6%
4107641 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 68.0 5.05e-01 100.0% 62.6%
3889197 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.76 69.0 5.27e-01 100.0% 66.5%
3824811 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.76 69.0 5.41e-01 100.0% 59.4%
3992087 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.76 69.0 5.26e-01 100.0% 54.1%
3836457 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.76 64.0 5.04e-01 90.8% 56.7%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 62.0 5.37e-01 88.2% 58.3%
3233524 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.76 69.0 5.19e-01 100.0% 52.6%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 68.0 6.38e-01 98.7% 94.4%
3411858 4.1.1.456 ↗ beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 0.75 68.0 4.20e-01 100.0% 21.4%
3902233 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.75 67.0 5.26e-01 100.0% 65.0%
3501834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 67.0 6.46e-01 97.4% 100.0%
3926120 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.75 61.0 4.85e-01 88.2% 45.5%
3621303 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 66.0 5.50e-01 97.4% 66.9%
3180191 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.74 68.0 5.33e-01 100.0% 66.0%
4645408 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.74 66.0 4.78e-01 98.7% 48.3%
3510024 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.74 61.0 5.37e-01 89.5% 84.5%
3995290 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.73 59.0 5.21e-01 86.8% 92.7%
None — 0.73 61.0 4.63e-01 89.5% 62.4%
4929262 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.73 60.0 4.69e-01 88.2% 62.6%
3870945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 4.41e-01 89.5% 50.0%
3683487 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.73 64.0 4.87e-01 97.4% 50.3%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.26e-01 90.8% 80.0%
3927213 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.71 56.0 5.84e-01 93.4% 91.4%
3793962 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.71 55.0 5.24e-01 92.1% 70.0%
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.71 60.0 5.68e-01 92.1% 90.0%
4026274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 4.74e-01 89.5% 51.4%
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 56.0 5.08e-01 93.4% 65.0%
3948209 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.39e-01 88.2% 81.3%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.70 54.0 5.35e-01 93.4% 78.8%
3815495 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 57.0 5.89e-01 96.1% 94.3%
3582876 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.70 55.0 4.94e-01 89.5% 61.9%
4020093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 4.32e-01 80.3% 75.6%
3670468 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.69 56.0 4.68e-01 88.2% 66.9%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.69 55.0 4.35e-01 88.2% 62.5%
3176265 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.68 55.0 4.39e-01 88.2% 64.5%
4268173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 60.0 3.86e-01 98.7% 57.3%
4109046 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 55.0 5.38e-01 90.8% 95.3%
3891882 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.67 60.0 4.05e-01 100.0% 82.5%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.67 50.0 5.39e-01 80.3% 93.8%
3216614 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.67 60.0 3.91e-01 100.0% 72.0%
5034832 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.32e-01 82.9% 100.0%
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.27e-01 89.5% 92.9%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.36e-01 94.7% 100.0%
5031673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.73e-01 90.8% 78.1%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.60 43.0 4.40e-01 76.3% 85.3%