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NC_054718.1__YP_010057693.1__KHO61_gp053__00053

Bact-Vir

NC_054718.1__YP_010057693.1__KHO61_gp053__00053

Identity

Accession:
NC_054718 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bixzunavirus› Mycobacterium_phage_Mangeria

TaxID: 2686471

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-84
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7vbnL01 3.30.160.190 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain 0.71 52.0 4.76e-01 76.3% 76.8%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.65 45.0 3.88e-01 73.7% 48.0%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 46.0 4.16e-01 76.3% 80.6%
4oloB00 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.64 44.0 4.24e-01 71.1% 88.1%
5z3gZ01 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.63 46.0 3.89e-01 76.3% 48.4%
3icjA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.62 41.0 4.13e-01 76.3% 65.8%
2ljuA01 3.30.160.190 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain 0.61 45.0 4.58e-01 77.6% 100.0%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.60 42.0 3.74e-01 72.4% 51.9%
1ewqA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.60 49.0 4.23e-01 89.5% 85.6%
2opiA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.60 41.0 3.03e-01 71.1% 78.2%
2v5gA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.60 48.0 4.12e-01 88.2% 70.0%
2x6nD00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 44.0 3.44e-01 81.6% 51.1%
1nmnA00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.59 45.0 3.96e-01 85.5% 98.3%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.58 42.0 3.48e-01 76.3% 48.5%
4s2rP02 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.56 46.0 3.65e-01 90.8% 89.2%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.56 42.0 3.09e-01 82.9% 61.7%
3oesA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 39.0 3.07e-01 92.1% 36.3%
1eucA02 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.54 43.0 3.37e-01 89.5% 86.5%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.53 37.0 4.14e-01 76.3% 96.5%
1yu9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 3.01e-01 78.9% 92.8%
3rioA01 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.51 36.0 3.76e-01 72.4% 85.3%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 3.34e-01 86.8% 97.1%
4hnvB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 38.0 2.56e-01 84.2% 51.4%
1u8zA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 3.17e-01 86.8% 97.6%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4955671 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.70 45.0 4.46e-01 71.1% 62.5%
3249050 3203.1.1.1 ↗ a+b two layers › Putative oxidoreductase › Putative oxidoreductase › Putative oxidoreductase › NDUS4 0.69 51.0 4.51e-01 77.6% 70.0%
4053786 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.67 48.0 4.30e-01 77.6% 54.3%
3617021 3209.1.1.1 ↗ a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.67 47.0 3.89e-01 73.7% 43.0%
5020579 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 46.0 4.22e-01 72.4% 58.6%
5071331 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 43.0 4.19e-01 77.6% 60.0%
5018419 2484.1.1.139 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 0.66 52.0 3.67e-01 85.5% 88.1%
4854144 3209.1.1.1 ↗ a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.66 47.0 3.87e-01 76.3% 45.1%
3954531 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.65 44.0 4.07e-01 71.1% 55.8%
4984268 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.64 44.0 4.03e-01 71.1% 56.0%
3439312 3209.1.1.1 ↗ a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.64 45.0 4.33e-01 75.0% 70.0%
3967791 2007.3.1.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Succ_CoA_lig 0.64 46.0 3.55e-01 97.4% 34.1%
4937559 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.64 44.0 4.15e-01 71.1% 62.2%
3987365 896.1.1.4 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.63 45.0 4.46e-01 75.0% 76.2%
146982 3203.1.1.1 ↗ a+b two layers › Putative oxidoreductase › Putative oxidoreductase › Putative oxidoreductase › NDUS4 0.61 45.0 4.05e-01 77.6% 72.1%
5077971 2484.1.1.144 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.61 47.0 4.15e-01 85.5% 91.3%
3177726 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 42.0 3.17e-01 72.4% 30.8%
5065245 2007.3.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA 0.60 44.0 3.51e-01 93.4% 38.7%
4237388 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.60 47.0 3.05e-01 86.8% 93.5%
3273271 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 46.0 3.61e-01 85.5% 56.5%
4365607 2007.3.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA 0.58 45.0 3.45e-01 96.1% 36.6%
3589160 2484.1.1.231 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66, DDE_Tnp_IS66_C 0.58 49.0 3.57e-01 93.4% 50.2%
3926984 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 44.0 3.28e-01 84.2% 44.0%
5053046 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.57 44.0 3.38e-01 85.5% 90.8%
4317535 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.57 42.0 3.00e-01 81.6% 49.0%
2623870 2484.1.1.44 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pox_A22 0.57 46.0 3.71e-01 89.5% 98.7%
4028997 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 38.0 3.60e-01 73.7% 57.8%
4962369 304.4.1.11 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.54 39.0 3.27e-01 76.3% 80.8%
3394477 377.9.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like 0.54 38.0 4.08e-01 77.6% 95.0%
5044528 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.53 44.0 3.22e-01 90.8% 74.8%
2631918 3696.1.1.2 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD 0.52 35.0 3.83e-01 76.3% 91.4%
4032746 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 37.0 2.97e-01 80.3% 93.5%
3789409 837.1.1.1 ↗ a+b two layers › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal_S16 0.50 37.0 3.36e-01 77.6% 75.7%
3595893 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 41.0 2.74e-01 96.1% 40.0%
D2 medium residues 99-132
PDB