←Back to structures

NC_054720.1__YP_010058195.1__KHO63_gp207__00096

Bact-Vir

NC_054720.1__YP_010058195.1__KHO63_gp207__00096

Identity

Accession:
NC_054720 ↗
Kingdom:
phage

Quality

70.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bixzunavirus› Mycobacterium_phage_QBert

TaxID: 2502469

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-116
PDB
D2 high residues 209-349
PDB
Domain cluster: rep: MT457475.1__QKE60812.1__X__00007__D28-172
D3 high residues 365-493
PDB
Domain cluster: rep: MN813676.1__QHB36630.1__SEA_ADOLIN_48__00048__D1-106
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jgbA01 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.52 46.0 4.23e-01 100.0% 77.5%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4247992 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.58 38.0 4.45e-01 82.9% 100.0%
3720272 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 38.0 4.34e-01 73.6% 88.0%
2774829 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.57 45.0 3.63e-01 84.5% 76.7%
3944961 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.55 45.0 3.67e-01 89.1% 77.6%
5072024 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.54 43.0 3.47e-01 85.3% 82.9%
3849773 304.107.1.0 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.54 39.0 3.20e-01 76.0% 61.2%
3486620 220.1.1.165 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_trem 0.52 36.0 3.69e-01 71.3% 96.8%
3990021 304.55.1.13 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase 0.51 37.0 3.46e-01 76.7% 74.7%
5051909 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.51 41.0 3.36e-01 88.4% 81.2%
3483594 220.1.1.165 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_trem 0.50 36.0 3.67e-01 72.9% 96.0%
D4 medium residues 151-208
PDB
Domain cluster: representative
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.62 53.0 3.16e-01 100.0% 45.8%
4417998 2005.1.1.5 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c 0.62 52.0 3.39e-01 100.0% 71.9%
4056782 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.55 45.0 2.71e-01 100.0% 43.1%
3599405 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 45.0 2.83e-01 96.6% 81.9%
4405718 2004.1.1.178 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HDA2-3 0.53 40.0 2.62e-01 87.9% 77.8%
None — 0.53 42.0 2.63e-01 100.0% 45.4%
4437869 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.50 41.0 2.51e-01 100.0% 55.2%
4062902 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.50 44.0 2.61e-01 100.0% 53.5%