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NC_054720.1__YP_010058261.1__KHO63_gp141__00162

Bact-Vir

NC_054720.1__YP_010058261.1__KHO63_gp141__00162

Identity

Accession:
NC_054720 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-76
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19563.5 best DUF6085 68.4 7.20e-19 100.0% 54.0%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5oomJ01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.54 43.0 4.43e-01 98.5% 97.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4373903 206.1.3.18 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 0.66 58.0 3.78e-01 100.0% 23.0%
3837987 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.57 47.0 4.74e-01 100.0% 92.9%
2324028 10.12.1.58 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DMSP_lyase 0.55 46.0 2.98e-01 100.0% 26.3%
3695940 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.54 42.0 4.27e-01 98.5% 93.8%
4298531 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.53 26.0 2.25e-01 98.5% 23.5%