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NC_054723.1__YP_010058815.1__KHQ83_gp026__00026
Bact-VirNC_054723.1__YP_010058815.1__KHQ83_gp026__00026
Identity
- Accession:
- NC_054723 ↗
- Kingdom:
- phage
Quality
81.4
mean pLDDT
Taxonomy
TaxID: 2571249
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-93
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i62A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.66 | 43.0 | 3.65e-01 | 92.3% | 41.7% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 44.0 | 4.62e-01 | 71.4% | 92.7% |
| 1ea0A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.60 | 49.0 | 3.20e-01 | 91.2% | 32.5% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 40.0 | 3.81e-01 | 73.6% | 84.3% |
| 4z80A01 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.57 | 44.0 | 4.17e-01 | 100.0% | 68.7% |
| 3rbsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 32.0 | 3.25e-01 | 100.0% | 54.5% |
| 1nxiA00 | 3.30.70.970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like | 0.55 | 38.0 | 3.46e-01 | 72.5% | 67.4% |
| 1apsA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 39.0 | 3.82e-01 | 72.5% | 85.7% |
| 1gx5A03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.53 | 45.0 | 4.17e-01 | 97.8% | 93.4% |
| 1jb0D00 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.53 | 40.0 | 3.49e-01 | 81.3% | 60.9% |
| 3nrnA02 | 3.90.660.50 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.51 | 35.0 | 2.86e-01 | 70.3% | 63.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4016320 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.66 | 46.0 | 4.35e-01 | 71.4% | 82.9% |
| 3413368 | 304.28.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › NPC1_MLD | 0.60 | 41.0 | 2.98e-01 | 71.4% | 79.2% |
| 3924817 | 886.1.1.0 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain | 0.59 | 41.0 | 3.38e-01 | 82.4% | 37.2% |
| 3503653 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.58 | 46.0 | 3.17e-01 | 84.6% | 56.2% |
| 3564603 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 40.0 | 3.95e-01 | 72.5% | 96.8% |
| 3706941 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.57 | 41.0 | 3.45e-01 | 75.8% | 49.0% |
| 3251650 | 10.2.1.84 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Seipin | 0.56 | 38.0 | 3.26e-01 | 71.4% | 96.8% |
| 3716479 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.55 | 44.0 | 3.60e-01 | 89.0% | 77.1% |
| 3300115 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.53 | 41.0 | 3.97e-01 | 83.5% | 87.6% |
| 3398955 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.53 | 37.0 | 2.54e-01 | 73.6% | 25.0% |
| 5010788 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.52 | 44.0 | 3.35e-01 | 96.7% | 69.1% |
| 3572158 | 223.1.1.114 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30393 | 0.51 | 42.0 | 3.25e-01 | 93.4% | 56.4% |
| 3599724 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.51 | 34.0 | 2.95e-01 | 73.6% | 42.8% |
| 3790957 | 3562.1.1.21 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › NRF | 0.51 | 44.0 | 3.60e-01 | 100.0% | 55.6% |
| 3969033 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.51 | 43.0 | 3.23e-01 | 96.7% | 69.4% |
| 3635637 | 212.1.1.12 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 | 0.50 | 42.0 | 3.56e-01 | 91.2% | 73.3% |