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NC_054723.1__YP_010058820.1__KHQ83_gp031__00031
Bact-VirNC_054723.1__YP_010058820.1__KHQ83_gp031__00031
Identity
- Accession:
- NC_054723 ↗
- Kingdom:
- phage
Quality
88.9
mean pLDDT
Taxonomy
TaxID: 2571249
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-46
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kkmA01 | 1.20.1440.170 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like | 0.86 | 77.0 | 5.35e-01 | 100.0% | 36.0% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.84 | 70.0 | 6.55e-01 | 95.2% | 81.1% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.81 | 70.0 | 5.61e-01 | 100.0% | 50.6% |
| 7t7kA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.80 | 68.0 | 5.00e-01 | 100.0% | 36.4% |
| 3g3oA00 | 3.20.100.30 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain | 0.80 | 66.0 | 3.96e-01 | 100.0% | 14.2% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 69.0 | 5.94e-01 | 100.0% | 62.7% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 63.0 | 4.13e-01 | 100.0% | 21.0% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.79 | 67.0 | 5.89e-01 | 100.0% | 66.2% |
| 2l35A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.79 | 67.0 | 5.97e-01 | 100.0% | 76.2% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.79 | 69.0 | 5.06e-01 | 100.0% | 49.1% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.77 | 63.0 | 5.65e-01 | 95.2% | 66.1% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.77 | 64.0 | 4.72e-01 | 100.0% | 37.3% |
| 3ripA02 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.76 | 64.0 | 3.91e-01 | 100.0% | 16.8% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.76 | 65.0 | 4.50e-01 | 100.0% | 78.3% |
| 3sllA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.75 | 60.0 | 5.42e-01 | 95.2% | 100.0% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.74 | 61.0 | 4.22e-01 | 100.0% | 27.7% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.74 | 63.0 | 6.12e-01 | 100.0% | 89.4% |
| 2z16B01 | 1.20.91.10 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 | 0.73 | 55.0 | 4.60e-01 | 95.2% | 46.2% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 59.0 | 5.51e-01 | 100.0% | 72.4% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 61.0 | 5.63e-01 | 100.0% | 78.9% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 59.0 | 5.23e-01 | 100.0% | 70.6% |
| 6qelA01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.72 | 58.0 | 3.99e-01 | 92.9% | 27.8% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 59.0 | 5.30e-01 | 100.0% | 66.1% |
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 51.0 | 4.53e-01 | 100.0% | 53.2% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.70 | 59.0 | 4.80e-01 | 100.0% | 49.4% |
| 1t7sA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.70 | 60.0 | 4.31e-01 | 100.0% | 35.7% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 60.0 | 4.62e-01 | 100.0% | 43.1% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 61.0 | 4.93e-01 | 100.0% | 55.6% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 60.0 | 5.73e-01 | 100.0% | 89.8% |
| 4g3vA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.69 | 58.0 | 3.91e-01 | 97.6% | 83.3% |
| 3qxzA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.68 | 57.0 | 5.13e-01 | 97.6% | 71.7% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 54.0 | 4.74e-01 | 100.0% | 71.6% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 58.0 | 4.90e-01 | 100.0% | 69.0% |
| 2qsaA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.66 | 54.0 | 4.24e-01 | 100.0% | 41.6% |
| 1lujB01 | 1.10.10.490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT | 0.66 | 45.0 | 4.19e-01 | 78.6% | 56.6% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.65 | 56.0 | 4.06e-01 | 100.0% | 46.0% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.64 | 54.0 | 4.72e-01 | 100.0% | 70.1% |
| 2og9A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.63 | 49.0 | 3.70e-01 | 100.0% | 83.8% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.63 | 54.0 | 3.26e-01 | 100.0% | 37.5% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 53.0 | 3.65e-01 | 100.0% | 37.0% |
| 1rajA01 | 4.10.880.10 | Few Secondary Structures › Irregular › Poliovirus 3D polymerase; domain 1 (Nucleotidyltransferase) › Poliovirus 3D polymerase Domain 1 (Nucleotidyltransferase) | 0.62 | 46.0 | 4.54e-01 | 78.6% | 86.4% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 53.0 | 3.64e-01 | 100.0% | 45.4% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.62 | 46.0 | 3.98e-01 | 100.0% | 47.2% |
| 1hwyA01 | 1.10.287.140 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 50.0 | 4.78e-01 | 100.0% | 86.3% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 47.0 | 4.05e-01 | 97.6% | 50.6% |
| 2j5iA02 | 6.10.250.2850 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 46.0 | 4.74e-01 | 90.5% | 100.0% |
| 1l0oA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.60 | 51.0 | 3.57e-01 | 97.6% | 33.3% |
| 1t07A00 | 1.10.3880.10 | Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX | 0.58 | 44.0 | 3.78e-01 | 95.2% | 50.6% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4076265 | 3390.1.1.0 ↗ | extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT | 0.86 | 73.0 | 7.02e-01 | 100.0% | 84.0% |
| 4432304 | 3390.1.1.0 ↗ | extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT | 0.84 | 71.0 | 6.80e-01 | 100.0% | 86.0% |
| 3784055 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.83 | 72.0 | 5.08e-01 | 100.0% | 32.3% |
| 5030596 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.83 | 71.0 | 6.22e-01 | 100.0% | 64.6% |
| 3463858 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.82 | 71.0 | 5.38e-01 | 100.0% | 43.0% |
| 3513381 | 4082.1.1.0 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain | 0.82 | 69.0 | 6.22e-01 | 97.6% | 75.0% |
| 5042057 | 3871.1.1.0 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST | 0.82 | 71.0 | 5.51e-01 | 100.0% | 45.2% |
| 4229778 | 3390.1.1.0 ↗ | extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT | 0.81 | 68.0 | 6.55e-01 | 100.0% | 84.0% |
| 3645559 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.81 | 71.0 | 5.53e-01 | 100.0% | 48.9% |
| 3378525 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.80 | 69.0 | 5.17e-01 | 100.0% | 41.9% |
| None | — | 0.79 | 66.0 | 4.13e-01 | 95.2% | 18.7% | |
| 4250212 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.77 | 66.0 | 4.20e-01 | 100.0% | 19.6% |
| 3430567 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.76 | 65.0 | 5.86e-01 | 100.0% | 78.3% |
| 4971062 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.76 | 66.0 | 5.26e-01 | 100.0% | 60.0% |
| 3506175 | 604.18.1.1 ↗ | alpha bundles › Spectrin repeat-like › Triple-helical domain in regulatory ATPase variant A (RavA) › Triple-helical domain in regulatory ATPase variant A (RavA) › ATPase_RavA_C | 0.75 | 63.0 | 5.75e-01 | 100.0% | 75.0% |
| 3377445 | 4274.1.1.4 ↗ | extended segments › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › SPC12 | 0.75 | 62.0 | 5.10e-01 | 100.0% | 50.6% |
| 4309485 | 4229.1.1.2 ↗ | alpha bundles › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Trp_dioxygenase | 0.75 | 61.0 | 3.61e-01 | 100.0% | 13.2% |
| 3603648 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.74 | 65.0 | 5.10e-01 | 100.0% | 61.4% |
| 4437178 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.74 | 63.0 | 4.15e-01 | 100.0% | 22.7% |
| 3780651 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.74 | 63.0 | 5.54e-01 | 100.0% | 78.5% |
| 3882597 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.74 | 62.0 | 4.96e-01 | 100.0% | 50.0% |
| 3654589 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.73 | 58.0 | 4.74e-01 | 100.0% | 54.4% |
| 3605793 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.72 | 58.0 | 4.99e-01 | 100.0% | 56.0% |
| 3410594 | 4177.1.1.6 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3_WASP_bdg | 0.71 | 58.0 | 3.80e-01 | 100.0% | 21.5% |
| 3700089 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.71 | 57.0 | 5.14e-01 | 100.0% | 83.1% |
| 3896686 | 192.8.1.36 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain | 0.70 | 51.0 | 3.88e-01 | 100.0% | 33.0% |
| 3331809 | 375.1.9.23 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Sterile | 0.70 | 58.0 | 3.92e-01 | 100.0% | 24.6% |
| 3928221 | 4.1.1.310 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26050 | 0.70 | 59.0 | 4.17e-01 | 100.0% | 40.0% |
| 3386373 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.69 | 55.0 | 4.97e-01 | 100.0% | 64.6% |
| 3838316 | 3567.1.1.150 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › H-kinase_dim | 0.68 | 54.0 | 4.70e-01 | 100.0% | 60.0% |
| 5060383 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.68 | 59.0 | 4.89e-01 | 100.0% | 62.7% |
| 4505840 | 3757.1.1.0 ↗ | extended segments › AF1503 pre-HAMP domain › AF1503 pre-HAMP domain › AF1503 pre-HAMP domain | 0.68 | 55.0 | 5.33e-01 | 100.0% | 90.0% |
| 3217233 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 56.0 | 4.51e-01 | 100.0% | 47.8% |
| 3260684 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.67 | 59.0 | 5.40e-01 | 100.0% | 94.5% |
| 4007679 | 192.15.1.109 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Caudo_TAP | 0.67 | 58.0 | 4.85e-01 | 100.0% | 58.1% |
| 3355246 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.67 | 55.0 | 4.63e-01 | 100.0% | 55.0% |
| 3295707 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 54.0 | 5.53e-01 | 95.2% | 100.0% |
| 3410365 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.63 | 53.0 | 3.12e-01 | 100.0% | 11.1% |
| 3482907 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.62 | 54.0 | 3.98e-01 | 100.0% | 53.0% |
| 3597537 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.62 | 52.0 | 2.99e-01 | 97.6% | 9.5% |
| 3492613 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.60 | 48.0 | 4.79e-01 | 100.0% | 91.1% |