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NC_054723.1__YP_010058842.1__KHQ83_gp223__00053
Bact-VirNC_054723.1__YP_010058842.1__KHQ83_gp223__00053
Identity
- Accession:
- NC_054723 ↗
- Kingdom:
- phage
Quality
54.5
mean pLDDT
Taxonomy
TaxID: 2571249
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 115-161
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bagA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.64 | 44.0 | 3.79e-01 | 97.9% | 43.6% |
| 4xpmB00 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.63 | 51.0 | 4.66e-01 | 95.7% | 95.5% |
| 3e53A00 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.61 | 50.0 | 2.96e-01 | 97.9% | 37.2% |
| 2ymsB00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 42.0 | 3.68e-01 | 74.5% | 82.4% |
| 3a2kA03 | 3.30.465.60 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.60 | 47.0 | 4.10e-01 | 97.9% | 90.7% |
| 2iz4A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.59 | 49.0 | 4.93e-01 | 97.9% | 100.0% |
| 1a1xA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.59 | 50.0 | 3.88e-01 | 95.7% | 63.2% |
| 3gqwB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.57 | 48.0 | 2.82e-01 | 100.0% | 34.5% |
| 2g3mA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 41.0 | 3.42e-01 | 100.0% | 42.7% |
| 7l59A02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 43.0 | 3.54e-01 | 97.9% | 79.1% |
| 1uh9A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.56 | 45.0 | 3.33e-01 | 100.0% | 74.5% |
| 4r0mB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.55 | 46.0 | 2.72e-01 | 100.0% | 30.5% |
| 4i1kA00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.55 | 46.0 | 3.49e-01 | 97.9% | 42.4% |
| 4pdyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 40.0 | 3.31e-01 | 87.2% | 85.9% |
| 2qc5A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 40.0 | 2.49e-01 | 85.1% | 14.8% |
| 3nbxX04 | 2.40.128.430 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 39.0 | 3.25e-01 | 91.5% | 84.1% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.53 | 41.0 | 2.80e-01 | 95.7% | 22.3% |
| 3jyyA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 40.0 | 3.02e-01 | 89.4% | 65.7% |
| 2q83B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 39.0 | 3.23e-01 | 87.2% | 84.8% |
| 3alfA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 37.0 | 3.41e-01 | 80.9% | 67.1% |
| 3nojA01 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.51 | 41.0 | 2.94e-01 | 95.7% | 92.8% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4666731 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.66 | 59.0 | 5.15e-01 | 100.0% | 68.6% |
| 4274409 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.66 | 54.0 | 4.52e-01 | 95.7% | 88.2% |
| 4433852 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.65 | 53.0 | 4.30e-01 | 100.0% | 70.5% |
| 4420610 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.65 | 52.0 | 4.37e-01 | 95.7% | 84.3% |
| 4257552 | 3018.1.1.2 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS-like | 0.64 | 52.0 | 4.52e-01 | 95.7% | 81.2% |
| 4583847 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.64 | 50.0 | 4.30e-01 | 89.4% | 81.2% |
| 5012022 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.64 | 51.0 | 4.43e-01 | 97.9% | 56.8% |
| 4604249 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.64 | 51.0 | 4.27e-01 | 95.7% | 81.1% |
| 3962418 | 304.107.1.0 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain | 0.63 | 52.0 | 3.85e-01 | 100.0% | 40.0% |
| 4159968 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.63 | 50.0 | 4.20e-01 | 100.0% | 80.0% |
| 3272872 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 47.0 | 2.81e-01 | 85.1% | 68.3% |
| 3199213 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.62 | 45.0 | 2.76e-01 | 80.9% | 81.8% |
| 4580937 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.62 | 50.0 | 4.26e-01 | 100.0% | 81.1% |
| 4286163 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.62 | 50.0 | 4.12e-01 | 100.0% | 77.0% |
| 4663253 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.61 | 48.0 | 4.05e-01 | 93.6% | 80.0% |
| 4287928 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.61 | 49.0 | 4.14e-01 | 97.9% | 85.6% |
| 4554582 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.61 | 48.0 | 4.11e-01 | 97.9% | 85.6% |
| 4581946 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.60 | 48.0 | 4.06e-01 | 100.0% | 83.2% |
| 4194924 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.60 | 47.0 | 4.07e-01 | 95.7% | 80.0% |
| 1390065 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.60 | 47.0 | 3.93e-01 | 97.9% | 78.0% |
| 3793978 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.60 | 51.0 | 3.56e-01 | 100.0% | 98.2% |
| 4480868 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.60 | 47.0 | 4.00e-01 | 100.0% | 82.1% |
| 4623762 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.59 | 47.0 | 3.87e-01 | 97.9% | 78.0% |
| 3371508 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.59 | 43.0 | 4.16e-01 | 85.1% | 69.1% |
| 1697854 | 270.2.1.0 ↗ | beta barrels › FMT C-terminal domain-like › lantibiotic immunity protein SpaI › lantibiotic immunity protein SpaI | 0.58 | 49.0 | 3.77e-01 | 95.7% | 59.6% |
| 4200361 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.58 | 46.0 | 3.86e-01 | 97.9% | 85.3% |
| 4021862 | 7575.1.1.9 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › CHAT | 0.57 | 41.0 | 2.47e-01 | 78.7% | 100.0% |
| 4962828 | 283.2.1.20 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › DUF7261 | 0.56 | 49.0 | 3.63e-01 | 100.0% | 72.0% |
| 4127538 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.56 | 44.0 | 3.82e-01 | 95.7% | 85.9% |
| 3822617 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.56 | 42.0 | 3.68e-01 | 83.0% | 62.7% |
| 4405937 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.56 | 40.0 | 3.42e-01 | 97.9% | 42.4% |
| 4071981 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.55 | 44.0 | 3.97e-01 | 100.0% | 84.0% |
| 3450682 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 3.26e-01 | 100.0% | 50.3% |
| 3244850 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.54 | 42.0 | 2.88e-01 | 95.7% | 35.3% |
| 4664510 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.54 | 41.0 | 3.78e-01 | 87.2% | 95.4% |
| 3832620 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 41.0 | 3.23e-01 | 89.4% | 81.8% |
| 4646590 | 1164.1.1.0 ↗ | a+b two layers › Hypothetical virulence protein › Hypothetical virulence protein › Hypothetical virulence protein | 0.53 | 41.0 | 3.06e-01 | 100.0% | 33.3% |
| 3789517 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.53 | 39.0 | 2.35e-01 | 85.1% | 43.5% |
| 4030292 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 2.89e-01 | 100.0% | 41.8% |
| 4668790 | 3784.1.1.6 ↗ | a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › PF26353 | 0.52 | 43.0 | 3.49e-01 | 95.7% | 51.6% |
| 3605429 | 7579.1.1.51 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF676 | 0.52 | 40.0 | 2.54e-01 | 100.0% | 51.0% |
| 3683620 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.52 | 39.0 | 2.79e-01 | 87.2% | 25.3% |
| 3708219 | 331.23.1.4 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C | 0.50 | 37.0 | 3.45e-01 | 89.4% | 67.1% |
| 1109083 | 6120.1.1.1 ↗ | beta barrels › Pestivirus Npro endopeptidase C53 › Pestivirus Npro endopeptidase C53 › Pestivirus Npro endopeptidase C53 › Peptidase_C53 | 0.50 | 42.0 | 2.99e-01 | 95.7% | 29.9% |
| 3933187 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.50 | 41.0 | 2.94e-01 | 97.9% | 97.1% |