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NC_054723.1__YP_010059017.1__KHQ83_gp048__00228

Bact-Vir

Identity

Accession:: NC_054723 ↗
Kingdom:: phage

Quality

84.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Puppervirus› Gordonia_phage_Pupper

TaxID: 2571249

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-71

PDB

Domain cluster: rep: OR159664.1__WKW85988.1__SEA_JONJAMES_7__00007__D4-62

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2z8lA01	3.10.20.120	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.55	36.0	3.03e-01	93.9%	37.6%
3eaaA00	2.30.110.20	Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like	0.51	42.0	3.33e-01	100.0%	96.9%
2ougA00	3.30.70.940	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain	0.51	35.0	2.89e-01	80.3%	34.8%
5axmB00	3.30.70.3000	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1)	0.51	35.0	2.46e-01	100.0%	20.1%
4hkhA00	2.30.110.20	Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like	0.50	42.0	3.37e-01	100.0%	95.3%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3508261	883.1.1.0 ↗	a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like	0.58	48.0	3.41e-01	100.0%	28.0%
3523224	2004.1.1.19 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras	0.57	42.0	2.96e-01	80.3%	80.0%
4072538	304.17.1.1 ↗	a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG	0.57	39.0	3.33e-01	72.7%	41.7%
3789884	883.1.1.0 ↗	a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like	0.57	47.0	3.32e-01	100.0%	27.2%
4954522	878.1.1.1 ↗	a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194	0.57	40.0	3.71e-01	100.0%	55.3%
5048918	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.56	44.0	3.60e-01	87.9%	81.2%
None	—		0.55	45.0	2.90e-01	95.5%	43.0%
3938638	883.1.1.2 ↗	a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C	0.54	44.0	3.17e-01	100.0%	28.2%
3278700	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.54	43.0	3.35e-01	90.9%	69.4%
4036154	3747.1.1.2 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C	0.54	39.0	3.40e-01	86.4%	47.3%
4938355	324.1.1.1 ↗	a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC	0.54	45.0	3.63e-01	100.0%	47.6%
3728856	171.1.1.9 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3	0.53	36.0	2.60e-01	72.7%	68.0%
3489971	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.53	36.0	3.05e-01	71.2%	77.5%
3725909	284.1.3.1 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5	0.52	36.0	3.23e-01	100.0%	51.1%
3580898	2007.2.3.1 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase	0.52	36.0	2.71e-01	100.0%	30.0%
3391461	3308.2.1.1 ↗	beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD	0.51	37.0	3.62e-01	98.5%	72.0%
5078639	3926.1.1.1 ↗	alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D	0.51	40.0	2.97e-01	98.5%	31.1%
3963812	3170.1.1.0 ↗	a+b two layers › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1	0.51	36.0	3.15e-01	77.3%	60.9%
3701672	2004.1.1.26 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin	0.50	40.0	3.10e-01	93.9%	72.9%
5009929	304.51.1.7 ↗	a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6	0.50	39.0	3.09e-01	84.8%	52.1%